Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC019109.1-201ENST00000401725 1874 ntBASIC24.13■■□□□ 1.45
IFT140Q96RY7 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
IFT140Q96RY7 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
IFT140Q96RY7 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
IFT140Q96RY7 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 BLK-205ENST00000529894 2017 ntTSL 5 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
IFT140Q96RY7 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 VENTXP3-201ENST00000546480 773 ntBASIC24.13■■□□□ 1.45
IFT140Q96RY7 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 RARS-210ENST00000626454 177 ntTSL 5 BASIC24.13■■□□□ 1.45
IFT140Q96RY7 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
IFT140Q96RY7 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
IFT140Q96RY7 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC24.12■■□□□ 1.45
IFT140Q96RY7 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
IFT140Q96RY7 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
IFT140Q96RY7 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC24.12■■□□□ 1.45
IFT140Q96RY7 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC24.12■■□□□ 1.45
IFT140Q96RY7 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC24.12■■□□□ 1.45
IFT140Q96RY7 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC24.12■■□□□ 1.45
IFT140Q96RY7 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC24.12■■□□□ 1.45
IFT140Q96RY7 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
IFT140Q96RY7 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC24.11■■□□□ 1.45
IFT140Q96RY7 AC139712.1-201ENST00000378256 1875 ntBASIC24.11■■□□□ 1.45
IFT140Q96RY7 FKBP4P8-201ENST00000610931 1369 ntBASIC24.11■■□□□ 1.45
IFT140Q96RY7 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
IFT140Q96RY7 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC24.11■■□□□ 1.45
IFT140Q96RY7 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
IFT140Q96RY7 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
IFT140Q96RY7 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC24.11■■□□□ 1.45
IFT140Q96RY7 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
IFT140Q96RY7 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
IFT140Q96RY7 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
IFT140Q96RY7 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC24.11■■□□□ 1.45
IFT140Q96RY7 SNORA57-201ENST00000383870 149 ntBASIC24.11■■□□□ 1.45
IFT140Q96RY7 BAX-205ENST00000391871 687 ntTSL 5 BASIC24.11■■□□□ 1.45
IFT140Q96RY7 LINC00265-2P-201ENST00000413372 782 ntBASIC24.11■■□□□ 1.45
IFT140Q96RY7 PSAT1P2-201ENST00000426107 972 ntBASIC24.11■■□□□ 1.45
IFT140Q96RY7 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC24.11■■□□□ 1.45
IFT140Q96RY7 AC025186.1-201ENST00000478174 870 ntBASIC24.11■■□□□ 1.45
IFT140Q96RY7 ALG1L7P-201ENST00000502317 768 ntBASIC24.11■■□□□ 1.45
IFT140Q96RY7 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC24.11■■□□□ 1.45
IFT140Q96RY7 GAS7-216ENST00000583882 553 ntTSL 5 BASIC24.11■■□□□ 1.45
IFT140Q96RY7 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC24.11■■□□□ 1.45
IFT140Q96RY7 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
IFT140Q96RY7 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC24.11■■□□□ 1.45
IFT140Q96RY7 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
IFT140Q96RY7 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC24.11■■□□□ 1.45
IFT140Q96RY7 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
IFT140Q96RY7 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC24.11■■□□□ 1.45
IFT140Q96RY7 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
IFT140Q96RY7 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC24.1■■□□□ 1.45
IFT140Q96RY7 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
IFT140Q96RY7 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
IFT140Q96RY7 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
IFT140Q96RY7 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC24.1■■□□□ 1.45
IFT140Q96RY7 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC24.1■■□□□ 1.45
IFT140Q96RY7 SUPT20HL2-201ENST00000486479 2409 ntBASIC24.1■■□□□ 1.45
IFT140Q96RY7 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
IFT140Q96RY7 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
IFT140Q96RY7 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
IFT140Q96RY7 OR10N1P-201ENST00000392758 869 ntBASIC24.1■■□□□ 1.45
IFT140Q96RY7 PGAM1P11-201ENST00000416729 680 ntBASIC24.1■■□□□ 1.45
IFT140Q96RY7 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC24.1■■□□□ 1.45
IFT140Q96RY7 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC24.1■■□□□ 1.45
IFT140Q96RY7 DLK1-205ENST00000556051 469 ntTSL 2 BASIC24.1■■□□□ 1.45
IFT140Q96RY7 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
IFT140Q96RY7 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC24.1■■□□□ 1.45
IFT140Q96RY7 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC24.1■■□□□ 1.45
IFT140Q96RY7 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC24.1■■□□□ 1.45
IFT140Q96RY7 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
IFT140Q96RY7 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
IFT140Q96RY7 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC24.1■■□□□ 1.45
IFT140Q96RY7 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
IFT140Q96RY7 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
IFT140Q96RY7 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC24.09■■□□□ 1.45
IFT140Q96RY7 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC24.09■■□□□ 1.45
IFT140Q96RY7 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
IFT140Q96RY7 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC24.09■■□□□ 1.45
IFT140Q96RY7 SSR4P1-203ENST00000599569 2260 ntBASIC24.09■■□□□ 1.45
IFT140Q96RY7 KHSRPP1-201ENST00000427983 1768 ntBASIC24.09■■□□□ 1.45
IFT140Q96RY7 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
IFT140Q96RY7 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC24.09■■□□□ 1.45
IFT140Q96RY7 AC087203.1-201ENST00000532111 1181 ntBASIC24.09■■□□□ 1.45
IFT140Q96RY7 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC24.09■■□□□ 1.45
IFT140Q96RY7 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC24.09■■□□□ 1.45
IFT140Q96RY7 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC24.09■■□□□ 1.45
IFT140Q96RY7 AC110057.1-201ENST00000636031 898 ntBASIC24.09■■□□□ 1.45
IFT140Q96RY7 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
IFT140Q96RY7 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
IFT140Q96RY7 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
IFT140Q96RY7 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC24.09■■□□□ 1.45
IFT140Q96RY7 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
IFT140Q96RY7 CICP13-201ENST00000422015 2789 ntBASIC24.09■■□□□ 1.45
IFT140Q96RY7 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC24.09■■□□□ 1.45
IFT140Q96RY7 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
IFT140Q96RY7 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms