Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.28■□□□□ 0.36
USP28Q96RU2 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.28■□□□□ 0.36
USP28Q96RU2 RFPL4AP1-201ENST00000530883 850 ntBASIC17.28■□□□□ 0.36
USP28Q96RU2 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.28■□□□□ 0.36
USP28Q96RU2 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
USP28Q96RU2 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC17.28■□□□□ 0.36
USP28Q96RU2 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
USP28Q96RU2 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC17.28■□□□□ 0.36
USP28Q96RU2 AC055811.4-201ENST00000624039 1754 ntBASIC17.28■□□□□ 0.36
USP28Q96RU2 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
USP28Q96RU2 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
USP28Q96RU2 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
USP28Q96RU2 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC17.27■□□□□ 0.36
USP28Q96RU2 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
USP28Q96RU2 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
USP28Q96RU2 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC17.27■□□□□ 0.36
USP28Q96RU2 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
USP28Q96RU2 AL161772.1-201ENST00000610494 4412 ntBASIC17.27■□□□□ 0.36
USP28Q96RU2 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 RNU1-114P-201ENST00000365297 166 ntBASIC17.27■□□□□ 0.36
USP28Q96RU2 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.27■□□□□ 0.36
USP28Q96RU2 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.27■□□□□ 0.36
USP28Q96RU2 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.27■□□□□ 0.36
USP28Q96RU2 AC098850.1-201ENST00000419919 790 ntBASIC17.27■□□□□ 0.36
USP28Q96RU2 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 RPL13AP25-201ENST00000484130 612 ntBASIC17.27■□□□□ 0.36
USP28Q96RU2 AC022447.6-201ENST00000515522 438 ntBASIC17.27■□□□□ 0.36
USP28Q96RU2 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.27■□□□□ 0.36
USP28Q96RU2 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.27■□□□□ 0.36
USP28Q96RU2 AC124283.3-201ENST00000570869 594 ntBASIC17.27■□□□□ 0.36
USP28Q96RU2 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.27■□□□□ 0.36
USP28Q96RU2 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.27■□□□□ 0.36
USP28Q96RU2 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.27■□□□□ 0.36
USP28Q96RU2 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.27■□□□□ 0.36
USP28Q96RU2 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.27■□□□□ 0.36
USP28Q96RU2 AC006538.3-201ENST00000612495 578 ntBASIC17.27■□□□□ 0.36
USP28Q96RU2 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.36
USP28Q96RU2 AC007431.3-201ENST00000623221 587 ntBASIC17.27■□□□□ 0.36
USP28Q96RU2 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
USP28Q96RU2 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
USP28Q96RU2 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP28Q96RU2 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.27■□□□□ 0.35
USP28Q96RU2 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP28Q96RU2 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.27■□□□□ 0.35
USP28Q96RU2 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP28Q96RU2 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
USP28Q96RU2 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
USP28Q96RU2 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
USP28Q96RU2 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP28Q96RU2 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
USP28Q96RU2 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP28Q96RU2 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
USP28Q96RU2 SLC7A15P-201ENST00000424028 1363 ntBASIC17.27■□□□□ 0.35
USP28Q96RU2 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
USP28Q96RU2 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
USP28Q96RU2 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP28Q96RU2 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
USP28Q96RU2 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP28Q96RU2 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP28Q96RU2 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP28Q96RU2 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USP28Q96RU2 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP28Q96RU2 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
USP28Q96RU2 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
USP28Q96RU2 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
USP28Q96RU2 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
USP28Q96RU2 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC17.26■□□□□ 0.35
USP28Q96RU2 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP28Q96RU2 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
USP28Q96RU2 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC17.26■□□□□ 0.35
USP28Q96RU2 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC17.26■□□□□ 0.35
USP28Q96RU2 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USP28Q96RU2 MEP1AP4-201ENST00000423244 1087 ntBASIC17.26■□□□□ 0.35
USP28Q96RU2 NUS1P3-201ENST00000423502 862 ntBASIC17.26■□□□□ 0.35
USP28Q96RU2 AC134915.1-201ENST00000426461 574 ntBASIC17.26■□□□□ 0.35
USP28Q96RU2 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.26■□□□□ 0.35
USP28Q96RU2 AC026434.2-201ENST00000506094 1078 ntBASIC17.26■□□□□ 0.35
USP28Q96RU2 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.26■□□□□ 0.35
USP28Q96RU2 AC055876.2-201ENST00000531834 546 ntBASIC17.26■□□□□ 0.35
USP28Q96RU2 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms