Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RPL3P5-201ENST00000441645 1232 ntBASIC14.54□□□□□ -0.08
VPS13AQ96RL7 HERC2P11-201ENST00000562845 725 ntBASIC14.54□□□□□ -0.08
VPS13AQ96RL7 AC100756.2-201ENST00000569537 736 ntBASIC14.54□□□□□ -0.08
VPS13AQ96RL7 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 CYP4F36P-201ENST00000589193 186 ntBASIC14.54□□□□□ -0.08
VPS13AQ96RL7 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
VPS13AQ96RL7 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 FTX-216ENST00000638985 1367 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 MIR1301-201ENST00000408518 82 ntBASIC14.53□□□□□ -0.08
VPS13AQ96RL7 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 AC021305.1-201ENST00000520656 1514 ntBASIC14.53□□□□□ -0.08
VPS13AQ96RL7 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 WASH7P-201ENST00000488147 1351 ntBASIC14.53□□□□□ -0.08
VPS13AQ96RL7 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 KRT18P46-201ENST00000435568 1279 ntBASIC14.53□□□□□ -0.08
VPS13AQ96RL7 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS13AQ96RL7 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 NQO2-204ENST00000380454 851 ntTSL 2 BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 XBP1P1-201ENST00000436573 652 ntBASIC14.52□□□□□ -0.08
VPS13AQ96RL7 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13AQ96RL7 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 ACTG1P19-201ENST00000418987 1116 ntBASIC14.52□□□□□ -0.09
VPS13AQ96RL7 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 CISD2-202ENST00000503643 808 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 MIR3188-201ENST00000583494 85 ntBASIC14.52□□□□□ -0.09
VPS13AQ96RL7 AC133540.1-201ENST00000620845 1019 ntBASIC14.52□□□□□ -0.09
VPS13AQ96RL7 MIR6746-201ENST00000620971 63 ntBASIC14.52□□□□□ -0.09
VPS13AQ96RL7 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13AQ96RL7 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms