Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AC134684.3-201ENST00000641758 218 ntBASIC11.39□□□□□ -0.59
LINC00477Q96M19 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 BTBD7P1-201ENST00000447253 1453 ntBASIC11.38□□□□□ -0.59
LINC00477Q96M19 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 AC107890.1-201ENST00000422478 521 ntBASIC11.38□□□□□ -0.59
LINC00477Q96M19 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 AC004967.1-201ENST00000453589 447 ntBASIC11.38□□□□□ -0.59
LINC00477Q96M19 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 MEIS3P1-201ENST00000495167 958 ntBASIC11.38□□□□□ -0.59
LINC00477Q96M19 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 AC044860.1-202ENST00000559481 777 ntBASIC11.38□□□□□ -0.59
LINC00477Q96M19 MPI-209ENST00000564003 1195 ntTSL 2 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 AC092337.1-201ENST00000568699 1129 ntBASIC11.38□□□□□ -0.59
LINC00477Q96M19 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 AC027612.4-201ENST00000605371 583 ntBASIC11.38□□□□□ -0.59
LINC00477Q96M19 AL596442.2-201ENST00000610240 980 ntBASIC11.38□□□□□ -0.59
LINC00477Q96M19 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 PES1-204ENST00000402284 2144 ntTSL 5 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
LINC00477Q96M19 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC11.38□□□□□ -0.59
LINC00477Q96M19 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
LINC00477Q96M19 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
LINC00477Q96M19 AC092053.3-201ENST00000641308 4975 ntBASIC11.37□□□□□ -0.59
LINC00477Q96M19 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms