Protein–RNA interactions for Protein: Q969G3

SMARCE1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, humanhuman

Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1Q969G3 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCE1Q969G3 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCE1Q969G3 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
SMARCE1Q969G3 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCE1Q969G3 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 AC114501.2-201ENST00000439631 535 ntBASIC17.11■□□□□ 0.33
SMARCE1Q969G3 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 AL590560.3-201ENST00000623350 461 ntBASIC17.11■□□□□ 0.33
SMARCE1Q969G3 AL158212.4-201ENST00000624062 1286 ntBASIC17.11■□□□□ 0.33
SMARCE1Q969G3 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 AL360270.3-201ENST00000609118 1348 ntBASIC17.11■□□□□ 0.33
SMARCE1Q969G3 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 BX640514.1-201ENST00000583223 1918 ntBASIC17.11■□□□□ 0.33
SMARCE1Q969G3 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 RDX-218ENST00000544551 4117 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCE1Q969G3 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 AC117489.1-201ENST00000625169 3217 ntBASIC17.1■□□□□ 0.33
SMARCE1Q969G3 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 MIR1233-2-201ENST00000408138 82 ntBASIC17.1■□□□□ 0.33
SMARCE1Q969G3 MIR1233-1-201ENST00000408722 82 ntBASIC17.1■□□□□ 0.33
SMARCE1Q969G3 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 FAM86GP-201ENST00000448322 971 ntBASIC17.1■□□□□ 0.33
SMARCE1Q969G3 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCE1Q969G3 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms