Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 RNU1-114P-201ENST00000365297 166 ntBASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 AC005229.1-201ENST00000392885 409 ntBASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 ACTBP8-201ENST00000403258 1108 ntBASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 AP001889.1-201ENST00000525414 633 ntBASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 AC106886.1-201ENST00000568660 600 ntBASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 AL603764.1-201ENST00000636452 321 ntBASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 KRT8P35-201ENST00000483942 1338 ntBASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 KRT8P14-201ENST00000414254 1442 ntBASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 FAM45BP-202ENST00000592932 1624 ntBASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 REXO1L4P-201ENST00000605109 1937 ntBASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 AC013726.1-201ENST00000563747 2285 ntBASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 LINC00554-201ENST00000564841 3011 ntBASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
NUP54Q7Z3B4 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
NUP54Q7Z3B4 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 KRT43P-201ENST00000434019 910 ntBASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 USP32P1-208ENST00000506594 1164 ntBASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 AL162274.1-201ENST00000617191 1098 ntBASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
NUP54Q7Z3B4 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms