Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17.05■□□□□ 0.32
CCNA1P78396 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CCNA1P78396 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCNA1P78396 AC090616.6-203ENST00000579186 1945 ntBASIC17.05■□□□□ 0.32
CCNA1P78396 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.05■□□□□ 0.32
CCNA1P78396 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCNA1P78396 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.05■□□□□ 0.32
CCNA1P78396 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCNA1P78396 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CCNA1P78396 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCNA1P78396 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CCNA1P78396 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCNA1P78396 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCNA1P78396 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CCNA1P78396 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CCNA1P78396 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.04■□□□□ 0.32
CCNA1P78396 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
CCNA1P78396 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC17.04■□□□□ 0.32
CCNA1P78396 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
CCNA1P78396 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 AC098935.1-201ENST00000446057 611 ntBASIC17.04■□□□□ 0.32
CCNA1P78396 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC17.04■□□□□ 0.32
CCNA1P78396 PFN2-206ENST00000461930 606 ntTSL 4 BASIC17.04■□□□□ 0.32
CCNA1P78396 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC17.04■□□□□ 0.32
CCNA1P78396 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CCNA1P78396 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC17.04■□□□□ 0.32
CCNA1P78396 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.04■□□□□ 0.32
CCNA1P78396 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 PCDHB19P-201ENST00000570871 2371 ntBASIC17.04■□□□□ 0.32
CCNA1P78396 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 KRT8P21-201ENST00000430398 1491 ntBASIC17.04■□□□□ 0.32
CCNA1P78396 AC003102.2-201ENST00000589195 1469 ntBASIC17.04■□□□□ 0.32
CCNA1P78396 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.04■□□□□ 0.32
CCNA1P78396 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.04■□□□□ 0.32
CCNA1P78396 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
CCNA1P78396 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CCNA1P78396 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCNA1P78396 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 LILRP1-201ENST00000444199 1370 ntBASIC17.03■□□□□ 0.32
CCNA1P78396 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.03■□□□□ 0.32
CCNA1P78396 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC17.03■□□□□ 0.32
CCNA1P78396 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CCNA1P78396 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CCNA1P78396 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.03■□□□□ 0.32
CCNA1P78396 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC17.03■□□□□ 0.32
CCNA1P78396 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC17.03■□□□□ 0.32
CCNA1P78396 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CCNA1P78396 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC17.03■□□□□ 0.32
CCNA1P78396 FGFR3P1-201ENST00000449999 601 ntBASIC17.03■□□□□ 0.32
CCNA1P78396 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC17.03■□□□□ 0.32
CCNA1P78396 RN7SL258P-201ENST00000478664 300 ntBASIC17.03■□□□□ 0.32
CCNA1P78396 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC17.03■□□□□ 0.32
CCNA1P78396 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC17.03■□□□□ 0.32
CCNA1P78396 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC17.03■□□□□ 0.32
CCNA1P78396 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.03■□□□□ 0.32
CCNA1P78396 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CCNA1P78396 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.03■□□□□ 0.32
CCNA1P78396 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CCNA1P78396 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CCNA1P78396 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCNA1P78396 AL513523.2-202ENST00000427283 2040 ntBASIC17.03■□□□□ 0.32
CCNA1P78396 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCNA1P78396 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms