Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LIM2P55344 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.36□□□□□ -0.11
LIM2P55344 TMEM14DP-201ENST00000422205 345 ntBASIC14.36□□□□□ -0.11
LIM2P55344 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.36□□□□□ -0.11
LIM2P55344 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.36□□□□□ -0.11
LIM2P55344 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.36□□□□□ -0.11
LIM2P55344 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.36□□□□□ -0.11
LIM2P55344 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.36□□□□□ -0.11
LIM2P55344 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.36□□□□□ -0.11
LIM2P55344 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.36□□□□□ -0.11
LIM2P55344 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 DUX4L47-201ENST00000566374 394 ntBASIC14.36□□□□□ -0.11
LIM2P55344 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.36□□□□□ -0.11
LIM2P55344 AC008735.3-201ENST00000596646 500 ntBASIC14.36□□□□□ -0.11
LIM2P55344 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.36□□□□□ -0.11
LIM2P55344 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LIM2P55344 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.36□□□□□ -0.11
LIM2P55344 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.36□□□□□ -0.11
LIM2P55344 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
LIM2P55344 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
LIM2P55344 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
LIM2P55344 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 AC140479.7-201ENST00000636301 2332 ntBASIC14.36□□□□□ -0.11
LIM2P55344 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
LIM2P55344 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.36□□□□□ -0.11
LIM2P55344 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LIM2P55344 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.36□□□□□ -0.11
LIM2P55344 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
LIM2P55344 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LIM2P55344 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.35□□□□□ -0.11
LIM2P55344 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.35□□□□□ -0.11
LIM2P55344 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
LIM2P55344 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.35□□□□□ -0.11
LIM2P55344 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LIM2P55344 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 EIF3FP3-201ENST00000434851 1086 ntBASIC14.35□□□□□ -0.11
LIM2P55344 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.35□□□□□ -0.11
LIM2P55344 GIMAP3P-201ENST00000495150 836 ntBASIC14.35□□□□□ -0.11
LIM2P55344 USP32P1-208ENST00000506594 1164 ntBASIC14.35□□□□□ -0.11
LIM2P55344 AP001889.1-201ENST00000525414 633 ntBASIC14.35□□□□□ -0.11
LIM2P55344 SLC25A47P1-201ENST00000531577 414 ntBASIC14.35□□□□□ -0.11
LIM2P55344 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.35□□□□□ -0.11
LIM2P55344 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.35□□□□□ -0.11
LIM2P55344 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.35□□□□□ -0.11
LIM2P55344 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.35□□□□□ -0.11
LIM2P55344 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.35□□□□□ -0.11
LIM2P55344 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
LIM2P55344 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.35□□□□□ -0.11
LIM2P55344 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.35□□□□□ -0.11
LIM2P55344 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.35□□□□□ -0.11
LIM2P55344 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.35□□□□□ -0.11
LIM2P55344 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
LIM2P55344 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LIM2P55344 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LIM2P55344 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
LIM2P55344 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.34□□□□□ -0.11
LIM2P55344 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.34□□□□□ -0.11
LIM2P55344 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
LIM2P55344 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms