Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDH6P55285 AC015656.1-201ENST00000624209 3578 ntBASIC15.77■□□□□ 0.12
CDH6P55285 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
CDH6P55285 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CDH6P55285 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDH6P55285 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.77■□□□□ 0.12
CDH6P55285 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDH6P55285 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDH6P55285 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDH6P55285 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
CDH6P55285 AC140479.7-201ENST00000636301 2332 ntBASIC15.77■□□□□ 0.12
CDH6P55285 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDH6P55285 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDH6P55285 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDH6P55285 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CDH6P55285 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.77■□□□□ 0.12
CDH6P55285 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.77■□□□□ 0.12
CDH6P55285 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.77■□□□□ 0.12
CDH6P55285 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.77■□□□□ 0.12
CDH6P55285 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.77■□□□□ 0.12
CDH6P55285 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.77■□□□□ 0.12
CDH6P55285 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.77■□□□□ 0.12
CDH6P55285 AC133539.2-201ENST00000604757 467 ntBASIC15.77■□□□□ 0.12
CDH6P55285 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
CDH6P55285 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
CDH6P55285 PRSS30P-206ENST00000641773 873 ntBASIC15.77■□□□□ 0.12
CDH6P55285 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDH6P55285 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.77■□□□□ 0.11
CDH6P55285 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH6P55285 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.77■□□□□ 0.11
CDH6P55285 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH6P55285 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.77■□□□□ 0.11
CDH6P55285 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH6P55285 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH6P55285 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CDH6P55285 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
CDH6P55285 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH6P55285 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CDH6P55285 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH6P55285 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.11
CDH6P55285 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.77■□□□□ 0.11
CDH6P55285 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.77■□□□□ 0.11
CDH6P55285 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CDH6P55285 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
CDH6P55285 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
CDH6P55285 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH6P55285 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CDH6P55285 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 AC023908.3-201ENST00000564211 3047 ntBASIC15.76■□□□□ 0.11
CDH6P55285 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
CDH6P55285 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
CDH6P55285 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
CDH6P55285 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
CDH6P55285 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH6P55285 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.76■□□□□ 0.11
CDH6P55285 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
CDH6P55285 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 AL139094.1-201ENST00000405549 1188 ntBASIC15.76■□□□□ 0.11
CDH6P55285 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.76■□□□□ 0.11
CDH6P55285 ELK1P1-201ENST00000485699 580 ntBASIC15.76■□□□□ 0.11
CDH6P55285 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.76■□□□□ 0.11
CDH6P55285 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.76■□□□□ 0.11
CDH6P55285 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.76■□□□□ 0.11
CDH6P55285 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.76■□□□□ 0.11
CDH6P55285 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 AC008494.3-201ENST00000606615 944 ntBASIC15.76■□□□□ 0.11
CDH6P55285 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
CDH6P55285 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH6P55285 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
CDH6P55285 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CDH6P55285 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.76■□□□□ 0.11
CDH6P55285 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC15.76■□□□□ 0.11
CDH6P55285 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH6P55285 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
CDH6P55285 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
CDH6P55285 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.76■□□□□ 0.11
CDH6P55285 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CDH6P55285 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.76■□□□□ 0.11
CDH6P55285 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
CDH6P55285 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CDH6P55285 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.75■□□□□ 0.11
CDH6P55285 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms