Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC9P31274 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC19.73■□□□□ 0.75
HOXC9P31274 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC19.73■□□□□ 0.75
HOXC9P31274 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC9P31274 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC19.73■□□□□ 0.75
HOXC9P31274 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
HOXC9P31274 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC19.73■□□□□ 0.75
HOXC9P31274 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC19.73■□□□□ 0.75
HOXC9P31274 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC9P31274 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC9P31274 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC9P31274 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.73■□□□□ 0.75
HOXC9P31274 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
HOXC9P31274 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC9P31274 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC9P31274 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC9P31274 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
HOXC9P31274 KRT18P36-201ENST00000411618 1276 ntBASIC19.73■□□□□ 0.75
HOXC9P31274 RPL17P11-201ENST00000417593 544 ntBASIC19.73■□□□□ 0.75
HOXC9P31274 PFN2-206ENST00000461930 606 ntTSL 4 BASIC19.73■□□□□ 0.75
HOXC9P31274 RN7SL258P-201ENST00000478664 300 ntBASIC19.73■□□□□ 0.75
HOXC9P31274 NEU3-205ENST00000531619 582 ntTSL 5 BASIC19.73■□□□□ 0.75
HOXC9P31274 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
HOXC9P31274 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC19.73■□□□□ 0.75
HOXC9P31274 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC19.73■□□□□ 0.75
HOXC9P31274 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC19.73■□□□□ 0.75
HOXC9P31274 MIR7845-201ENST00000618396 99 ntBASIC19.73■□□□□ 0.75
HOXC9P31274 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC9P31274 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
HOXC9P31274 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC19.73■□□□□ 0.75
HOXC9P31274 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXC9P31274 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXC9P31274 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXC9P31274 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXC9P31274 FAS-202ENST00000352159 1722 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXC9P31274 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HOXC9P31274 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC19.72■□□□□ 0.75
HOXC9P31274 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXC9P31274 PTPA-215ENST00000432124 567 ntTSL 4 BASIC19.72■□□□□ 0.75
HOXC9P31274 XBP1P1-201ENST00000436573 652 ntBASIC19.72■□□□□ 0.75
HOXC9P31274 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC19.72■□□□□ 0.75
HOXC9P31274 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXC9P31274 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
HOXC9P31274 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC19.72■□□□□ 0.75
HOXC9P31274 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC19.72■□□□□ 0.75
HOXC9P31274 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC19.72■□□□□ 0.75
HOXC9P31274 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
HOXC9P31274 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 LINC01165-201ENST00000445190 1623 ntBASIC19.72■□□□□ 0.75
HOXC9P31274 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
HOXC9P31274 API5-203ENST00000455725 2257 ntTSL 2 BASIC19.72■□□□□ 0.75
HOXC9P31274 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
HOXC9P31274 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXC9P31274 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 AC007950.2-201ENST00000615045 2347 ntBASIC19.71■□□□□ 0.75
HOXC9P31274 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC9P31274 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 LINC01101-201ENST00000622953 1884 ntBASIC19.71■□□□□ 0.75
HOXC9P31274 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC9P31274 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC9P31274 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC9P31274 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC19.71■□□□□ 0.75
HOXC9P31274 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 RN7SL67P-201ENST00000492147 296 ntBASIC19.71■□□□□ 0.75
HOXC9P31274 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC9P31274 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC19.71■□□□□ 0.75
HOXC9P31274 RBM8B-201ENST00000555532 525 ntBASIC19.71■□□□□ 0.75
HOXC9P31274 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC19.71■□□□□ 0.75
HOXC9P31274 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXC9P31274 MVK-217ENST00000639206 367 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXC9P31274 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXC9P31274 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 PGR-210ENST00000619228 3038 ntTSL 5 BASIC19.71■□□□□ 0.75
HOXC9P31274 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
HOXC9P31274 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
HOXC9P31274 AC018629.1-201ENST00000623381 1736 ntBASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 230.3 ms