Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 AC078875.1-201ENST00000431907 724 ntBASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 AL109837.1-201ENST00000603272 613 ntBASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 AC051619.9-201ENST00000623237 597 ntBASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 AC012508.2-201ENST00000567613 1472 ntBASIC19.86■□□□□ 0.77
CSB-PGBD3P0DP91 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 AC020916.1-201ENST00000587762 1774 ntBASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 CAP2P1-201ENST00000557743 1390 ntBASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 AP000356.3-201ENST00000382243 753 ntBASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 SKA2-202ENST00000437036 625 ntTSL 2 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 CCNC-217ENST00000523985 958 ntTSL 2 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CSB-PGBD3P0DP91 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 AC074138.1-201ENST00000611182 1303 ntBASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 RN7SL67P-201ENST00000492147 296 ntBASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 AC008723.1-201ENST00000506922 207 ntBASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CSB-PGBD3P0DP91 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC19.83■□□□□ 0.77
CSB-PGBD3P0DP91 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms