Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC15.28■□□□□ 0.04
VIMP08670 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VIMP08670 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
VIMP08670 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC15.28■□□□□ 0.04
VIMP08670 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VIMP08670 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
VIMP08670 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC15.28■□□□□ 0.04
VIMP08670 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VIMP08670 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC15.28■□□□□ 0.04
VIMP08670 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VIMP08670 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
VIMP08670 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VIMP08670 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
VIMP08670 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VIMP08670 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VIMP08670 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.27■□□□□ 0.04
VIMP08670 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.27■□□□□ 0.04
VIMP08670 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC15.27■□□□□ 0.04
VIMP08670 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
VIMP08670 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.27■□□□□ 0.04
VIMP08670 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
VIMP08670 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
VIMP08670 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC15.27■□□□□ 0.04
VIMP08670 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.27■□□□□ 0.04
VIMP08670 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
VIMP08670 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
VIMP08670 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
VIMP08670 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.27■□□□□ 0.04
VIMP08670 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.27■□□□□ 0.04
VIMP08670 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 AZGP1P1-201ENST00000411909 902 ntBASIC15.27■□□□□ 0.04
VIMP08670 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
VIMP08670 SDHD-206ENST00000528182 754 ntTSL 3 BASIC15.27■□□□□ 0.04
VIMP08670 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC15.27■□□□□ 0.04
VIMP08670 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.27■□□□□ 0.04
VIMP08670 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.04
VIMP08670 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
VIMP08670 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
VIMP08670 AC117500.6-201ENST00000624871 588 ntBASIC15.27■□□□□ 0.04
VIMP08670 AC010507.1-201ENST00000633895 436 ntBASIC15.27■□□□□ 0.04
VIMP08670 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VIMP08670 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VIMP08670 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
VIMP08670 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VIMP08670 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
VIMP08670 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VIMP08670 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.27■□□□□ 0.03
VIMP08670 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VIMP08670 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
VIMP08670 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC15.27■□□□□ 0.03
VIMP08670 AC016397.2-201ENST00000624848 1985 ntBASIC15.27■□□□□ 0.03
VIMP08670 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VIMP08670 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VIMP08670 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
VIMP08670 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC15.27■□□□□ 0.03
VIMP08670 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VIMP08670 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC15.27■□□□□ 0.03
VIMP08670 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VIMP08670 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VIMP08670 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
VIMP08670 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
VIMP08670 INVS-201ENST00000262456 2968 ntTSL 5 BASIC15.27■□□□□ 0.03
VIMP08670 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.27■□□□□ 0.03
VIMP08670 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VIMP08670 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VIMP08670 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VIMP08670 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
VIMP08670 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC15.26■□□□□ 0.03
VIMP08670 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.26■□□□□ 0.03
VIMP08670 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VIMP08670 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VIMP08670 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC15.26■□□□□ 0.03
VIMP08670 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VIMP08670 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VIMP08670 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.26■□□□□ 0.03
VIMP08670 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VIMP08670 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
VIMP08670 TNN-202ENST00000621086 4234 ntTSL 5 BASIC15.26■□□□□ 0.03
VIMP08670 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VIMP08670 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC15.26■□□□□ 0.03
VIMP08670 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
VIMP08670 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VIMP08670 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms