Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
COL3A1P02461 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC19.57■□□□□ 0.72
COL3A1P02461 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC19.57■□□□□ 0.72
COL3A1P02461 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC19.57■□□□□ 0.72
COL3A1P02461 TPO-203ENST00000346956 2923 ntTSL 5 BASIC19.57■□□□□ 0.72
COL3A1P02461 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
COL3A1P02461 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 TUBBP5-203ENST00000508529 1334 ntBASIC19.56■□□□□ 0.72
COL3A1P02461 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 AP001267.2-201ENST00000532619 2086 ntBASIC19.56■□□□□ 0.72
COL3A1P02461 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
COL3A1P02461 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
COL3A1P02461 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 TPT1P11-201ENST00000458482 498 ntBASIC19.56■□□□□ 0.72
COL3A1P02461 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC19.56■□□□□ 0.72
COL3A1P02461 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC19.56■□□□□ 0.72
COL3A1P02461 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC19.56■□□□□ 0.72
COL3A1P02461 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
COL3A1P02461 AL021578.1-201ENST00000613646 709 ntBASIC19.56■□□□□ 0.72
COL3A1P02461 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
COL3A1P02461 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC19.56■□□□□ 0.72
COL3A1P02461 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL3A1P02461 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL3A1P02461 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL3A1P02461 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
COL3A1P02461 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC19.56■□□□□ 0.72
COL3A1P02461 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC19.55■□□□□ 0.72
COL3A1P02461 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 AC015688.4-201ENST00000580780 1647 ntBASIC19.55■□□□□ 0.72
COL3A1P02461 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
COL3A1P02461 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
COL3A1P02461 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 GAS5-209ENST00000430245 723 ntTSL 3 BASIC19.55■□□□□ 0.72
COL3A1P02461 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC19.55■□□□□ 0.72
COL3A1P02461 EIF4HP1-201ENST00000453115 687 ntBASIC19.55■□□□□ 0.72
COL3A1P02461 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC19.55■□□□□ 0.72
COL3A1P02461 AC003686.1-201ENST00000550956 1034 ntBASIC19.55■□□□□ 0.72
COL3A1P02461 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC19.55■□□□□ 0.72
COL3A1P02461 PAM16-211ENST00000575848 518 ntTSL 3 BASIC19.55■□□□□ 0.72
COL3A1P02461 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
COL3A1P02461 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC19.55■□□□□ 0.72
COL3A1P02461 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
COL3A1P02461 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
COL3A1P02461 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
COL3A1P02461 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC19.55■□□□□ 0.72
COL3A1P02461 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL3A1P02461 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC19.55■□□□□ 0.72
COL3A1P02461 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC19.55■□□□□ 0.72
COL3A1P02461 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC19.55■□□□□ 0.72
COL3A1P02461 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
COL3A1P02461 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC19.54■□□□□ 0.72
COL3A1P02461 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 CYP46A4P-201ENST00000414953 267 ntBASIC19.54■□□□□ 0.72
COL3A1P02461 FNTAP2-201ENST00000430308 634 ntBASIC19.54■□□□□ 0.72
COL3A1P02461 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC19.54■□□□□ 0.72
COL3A1P02461 XBP1P1-201ENST00000436573 652 ntBASIC19.54■□□□□ 0.72
COL3A1P02461 ST13P19-201ENST00000442505 1124 ntBASIC19.54■□□□□ 0.72
COL3A1P02461 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC19.54■□□□□ 0.72
COL3A1P02461 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC19.54■□□□□ 0.72
COL3A1P02461 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC19.54■□□□□ 0.72
COL3A1P02461 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL3A1P02461 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC19.54■□□□□ 0.72
COL3A1P02461 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC19.54■□□□□ 0.72
COL3A1P02461 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
COL3A1P02461 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
COL3A1P02461 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms