Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 AL603832.2-201ENST00000566195 2125 ntBASIC22.04■■□□□ 1.12
RAPGEF3O95398 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC22.04■■□□□ 1.12
RAPGEF3O95398 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC22.04■■□□□ 1.12
RAPGEF3O95398 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC22.04■■□□□ 1.12
RAPGEF3O95398 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RAPGEF3O95398 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RAPGEF3O95398 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RAPGEF3O95398 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
RAPGEF3O95398 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RAPGEF3O95398 PYY2-201ENST00000315776 282 ntBASIC22.04■■□□□ 1.12
RAPGEF3O95398 OR51A9P-201ENST00000422578 911 ntBASIC22.04■■□□□ 1.12
RAPGEF3O95398 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC22.04■■□□□ 1.12
RAPGEF3O95398 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC22.04■■□□□ 1.12
RAPGEF3O95398 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC22.04■■□□□ 1.12
RAPGEF3O95398 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC22.04■■□□□ 1.12
RAPGEF3O95398 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RAPGEF3O95398 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RAPGEF3O95398 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RAPGEF3O95398 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC22.04■■□□□ 1.12
RAPGEF3O95398 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RAPGEF3O95398 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RAPGEF3O95398 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RAPGEF3O95398 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC22.03■■□□□ 1.12
RAPGEF3O95398 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RAPGEF3O95398 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
RAPGEF3O95398 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RAPGEF3O95398 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC22.03■■□□□ 1.12
RAPGEF3O95398 AC005332.8-201ENST00000622750 2735 ntBASIC22.03■■□□□ 1.12
RAPGEF3O95398 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RAPGEF3O95398 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC22.03■■□□□ 1.12
RAPGEF3O95398 BLK-205ENST00000529894 2017 ntTSL 5 BASIC22.03■■□□□ 1.12
RAPGEF3O95398 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC22.03■■□□□ 1.12
RAPGEF3O95398 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RAPGEF3O95398 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC22.03■■□□□ 1.12
RAPGEF3O95398 OR8T1P-201ENST00000421347 918 ntBASIC22.03■■□□□ 1.12
RAPGEF3O95398 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RAPGEF3O95398 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RAPGEF3O95398 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC22.03■■□□□ 1.12
RAPGEF3O95398 LINC00244-201ENST00000625073 613 ntBASIC22.03■■□□□ 1.12
RAPGEF3O95398 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC22.03■■□□□ 1.12
RAPGEF3O95398 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RAPGEF3O95398 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC22.03■■□□□ 1.12
RAPGEF3O95398 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
RAPGEF3O95398 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC22.03■■□□□ 1.12
RAPGEF3O95398 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC22.03■■□□□ 1.12
RAPGEF3O95398 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RAPGEF3O95398 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RAPGEF3O95398 AC024909.3-201ENST00000611513 2257 ntBASIC22.03■■□□□ 1.12
RAPGEF3O95398 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC22.03■■□□□ 1.12
RAPGEF3O95398 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RAPGEF3O95398 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RAPGEF3O95398 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 AC010491.1-201ENST00000563101 2797 ntBASIC22.02■■□□□ 1.12
RAPGEF3O95398 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
RAPGEF3O95398 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RAPGEF3O95398 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RAPGEF3O95398 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RAPGEF3O95398 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RAPGEF3O95398 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
RAPGEF3O95398 MIR1301-201ENST00000408518 82 ntBASIC22.02■■□□□ 1.12
RAPGEF3O95398 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RAPGEF3O95398 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RAPGEF3O95398 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 EMC4-208ENST00000559078 599 ntTSL 3 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 NAV1-210ENST00000593583 726 ntBASIC22.02■■□□□ 1.12
RAPGEF3O95398 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RAPGEF3O95398 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC22.02■■□□□ 1.12
RAPGEF3O95398 AP002353.1-201ENST00000528257 1599 ntBASIC22.02■■□□□ 1.12
RAPGEF3O95398 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
RAPGEF3O95398 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RAPGEF3O95398 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC22.02■■□□□ 1.11
RAPGEF3O95398 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
RAPGEF3O95398 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
RAPGEF3O95398 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
RAPGEF3O95398 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RAPGEF3O95398 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RAPGEF3O95398 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC22.01■■□□□ 1.11
RAPGEF3O95398 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RAPGEF3O95398 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
RAPGEF3O95398 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RAPGEF3O95398 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC22.01■■□□□ 1.11
RAPGEF3O95398 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
RAPGEF3O95398 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC22.01■■□□□ 1.11
RAPGEF3O95398 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RAPGEF3O95398 CTSL-202ENST00000342020 933 ntTSL 2 BASIC22.01■■□□□ 1.11
RAPGEF3O95398 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
RAPGEF3O95398 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC22.01■■□□□ 1.11
RAPGEF3O95398 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms