Protein–RNA interactions for Protein: O75487

GPC4, Glypican-4, humanhuman

Predictions only

Length 556 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GPC4O75487 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
GPC4O75487 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
GPC4O75487 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.26■□□□□ 0.03
GPC4O75487 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
GPC4O75487 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.25■□□□□ 0.03
GPC4O75487 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 SLC7A15P-201ENST00000424028 1363 ntBASIC15.25■□□□□ 0.03
GPC4O75487 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.25■□□□□ 0.03
GPC4O75487 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
GPC4O75487 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
GPC4O75487 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC15.25■□□□□ 0.03
GPC4O75487 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC15.25■□□□□ 0.03
GPC4O75487 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.25■□□□□ 0.03
GPC4O75487 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 AC236430.1-201ENST00000402231 743 ntBASIC15.25■□□□□ 0.03
GPC4O75487 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.25■□□□□ 0.03
GPC4O75487 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.25■□□□□ 0.03
GPC4O75487 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.25■□□□□ 0.03
GPC4O75487 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.25■□□□□ 0.03
GPC4O75487 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.25■□□□□ 0.03
GPC4O75487 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.25■□□□□ 0.03
GPC4O75487 AC025181.2-201ENST00000606994 802 ntBASIC15.25■□□□□ 0.03
GPC4O75487 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.25■□□□□ 0.03
GPC4O75487 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
GPC4O75487 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.25■□□□□ 0.03
GPC4O75487 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.25■□□□□ 0.03
GPC4O75487 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
GPC4O75487 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.25■□□□□ 0.03
GPC4O75487 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
GPC4O75487 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.24■□□□□ 0.03
GPC4O75487 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
GPC4O75487 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
GPC4O75487 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
GPC4O75487 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
GPC4O75487 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
GPC4O75487 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 DFFBP1-201ENST00000433250 979 ntBASIC15.24■□□□□ 0.03
GPC4O75487 OARD1-208ENST00000469104 704 ntTSL 2 BASIC15.24■□□□□ 0.03
GPC4O75487 AC055876.2-201ENST00000531834 546 ntBASIC15.24■□□□□ 0.03
GPC4O75487 AC036164.1-201ENST00000570544 333 ntBASIC15.24■□□□□ 0.03
GPC4O75487 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.24■□□□□ 0.03
GPC4O75487 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.24■□□□□ 0.03
GPC4O75487 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC15.24■□□□□ 0.03
GPC4O75487 AL645728.2-202ENST00000641679 227 ntBASIC15.24■□□□□ 0.03
GPC4O75487 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
GPC4O75487 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.24■□□□□ 0.03
GPC4O75487 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 INTS4P1-203ENST00000641008 3683 ntBASIC15.24■□□□□ 0.03
GPC4O75487 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
GPC4O75487 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
GPC4O75487 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC15.23■□□□□ 0.03
GPC4O75487 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
GPC4O75487 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.23■□□□□ 0.03
GPC4O75487 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
GPC4O75487 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
GPC4O75487 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.23■□□□□ 0.03
GPC4O75487 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
GPC4O75487 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.23■□□□□ 0.03
GPC4O75487 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
GPC4O75487 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
GPC4O75487 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.23■□□□□ 0.03
GPC4O75487 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms