Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
RNF40O75150 AL928921.2-201ENST00000641325 2442 ntBASIC16.46■□□□□ 0.23
RNF40O75150 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
RNF40O75150 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.22
RNF40O75150 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
RNF40O75150 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.46■□□□□ 0.22
RNF40O75150 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
RNF40O75150 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
RNF40O75150 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
RNF40O75150 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 AC027601.5-201ENST00000624065 2482 ntBASIC16.45■□□□□ 0.22
RNF40O75150 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
RNF40O75150 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC16.45■□□□□ 0.22
RNF40O75150 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF40O75150 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.45■□□□□ 0.22
RNF40O75150 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF40O75150 CICP20-201ENST00000443330 2801 ntBASIC16.45■□□□□ 0.22
RNF40O75150 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.45■□□□□ 0.22
RNF40O75150 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF40O75150 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC16.45■□□□□ 0.22
RNF40O75150 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC16.45■□□□□ 0.22
RNF40O75150 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 MIR658-201ENST00000385210 100 ntBASIC16.45■□□□□ 0.22
RNF40O75150 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
RNF40O75150 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.45■□□□□ 0.22
RNF40O75150 AC092473.1-201ENST00000441098 221 ntBASIC16.45■□□□□ 0.22
RNF40O75150 ELK1P1-201ENST00000485699 580 ntBASIC16.45■□□□□ 0.22
RNF40O75150 HNRNPA1P23-201ENST00000491091 1133 ntBASIC16.45■□□□□ 0.22
RNF40O75150 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.45■□□□□ 0.22
RNF40O75150 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.45■□□□□ 0.22
RNF40O75150 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.45■□□□□ 0.22
RNF40O75150 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC16.45■□□□□ 0.22
RNF40O75150 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 AC106886.1-201ENST00000568660 600 ntBASIC16.45■□□□□ 0.22
RNF40O75150 CTBP2P3-201ENST00000585629 1255 ntBASIC16.45■□□□□ 0.22
RNF40O75150 AC099568.2-201ENST00000609194 695 ntBASIC16.45■□□□□ 0.22
RNF40O75150 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF40O75150 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
RNF40O75150 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF40O75150 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 AC136759.1-202ENST00000530858 2194 ntBASIC16.45■□□□□ 0.22
RNF40O75150 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
RNF40O75150 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF40O75150 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF40O75150 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
RNF40O75150 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.45■□□□□ 0.22
RNF40O75150 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.45■□□□□ 0.22
RNF40O75150 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
RNF40O75150 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RNF40O75150 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF40O75150 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF40O75150 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
RNF40O75150 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
RNF40O75150 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.44■□□□□ 0.22
RNF40O75150 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
RNF40O75150 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
RNF40O75150 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF40O75150 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF40O75150 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF40O75150 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RNF40O75150 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF40O75150 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
RNF40O75150 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
RNF40O75150 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
RNF40O75150 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.44■□□□□ 0.22
RNF40O75150 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF40O75150 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RNF40O75150 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.44■□□□□ 0.22
RNF40O75150 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.44■□□□□ 0.22
RNF40O75150 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms