Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CACNA1FO60840 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 BX640514.1-201ENST00000583223 1918 ntBASIC18.63■□□□□ 0.57
CACNA1FO60840 AC144522.1-201ENST00000625111 1658 ntBASIC18.63■□□□□ 0.57
CACNA1FO60840 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.63■□□□□ 0.57
CACNA1FO60840 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CACNA1FO60840 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC18.63■□□□□ 0.57
CACNA1FO60840 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
CACNA1FO60840 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 HNRNPA1P27-201ENST00000412087 955 ntBASIC18.63■□□□□ 0.57
CACNA1FO60840 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 ACTG1P17-201ENST00000558391 1119 ntBASIC18.63■□□□□ 0.57
CACNA1FO60840 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC18.63■□□□□ 0.57
CACNA1FO60840 AC091271.1-201ENST00000611877 1162 ntBASIC18.63■□□□□ 0.57
CACNA1FO60840 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC18.63■□□□□ 0.57
CACNA1FO60840 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC18.63■□□□□ 0.57
CACNA1FO60840 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
CACNA1FO60840 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC18.63■□□□□ 0.57
CACNA1FO60840 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC18.63■□□□□ 0.57
CACNA1FO60840 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC18.63■□□□□ 0.57
CACNA1FO60840 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CACNA1FO60840 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CACNA1FO60840 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CACNA1FO60840 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 HNRNPA1P32-201ENST00000396326 963 ntBASIC18.62■□□□□ 0.57
CACNA1FO60840 LBH-202ENST00000401506 485 ntTSL 3 BASIC18.62■□□□□ 0.57
CACNA1FO60840 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC18.62■□□□□ 0.57
CACNA1FO60840 AC078875.1-201ENST00000431907 724 ntBASIC18.62■□□□□ 0.57
CACNA1FO60840 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC18.62■□□□□ 0.57
CACNA1FO60840 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC18.62■□□□□ 0.57
CACNA1FO60840 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CACNA1FO60840 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC18.62■□□□□ 0.57
CACNA1FO60840 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC18.62■□□□□ 0.57
CACNA1FO60840 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC18.62■□□□□ 0.57
CACNA1FO60840 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CACNA1FO60840 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CACNA1FO60840 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CACNA1FO60840 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CACNA1FO60840 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CACNA1FO60840 JTB-202ENST00000356648 1040 ntTSL 2 BASIC18.62■□□□□ 0.57
CACNA1FO60840 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 RCC2P8-201ENST00000502779 1035 ntBASIC18.62■□□□□ 0.57
CACNA1FO60840 RN7SL574P-201ENST00000581512 297 ntBASIC18.62■□□□□ 0.57
CACNA1FO60840 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC18.62■□□□□ 0.57
CACNA1FO60840 AC097724.1-201ENST00000609581 426 ntBASIC18.62■□□□□ 0.57
CACNA1FO60840 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC18.62■□□□□ 0.57
CACNA1FO60840 GPR182-203ENST00000622922 591 ntBASIC18.62■□□□□ 0.57
CACNA1FO60840 DDX5-235ENST00000630471 473 ntTSL 4 BASIC18.62■□□□□ 0.57
CACNA1FO60840 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
CACNA1FO60840 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CACNA1FO60840 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CACNA1FO60840 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.61■□□□□ 0.57
CACNA1FO60840 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 LINC00552-201ENST00000625151 2579 ntBASIC18.61■□□□□ 0.57
CACNA1FO60840 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CACNA1FO60840 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC18.61■□□□□ 0.57
CACNA1FO60840 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC18.61■□□□□ 0.57
CACNA1FO60840 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC18.61■□□□□ 0.57
CACNA1FO60840 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CACNA1FO60840 AL022334.2-201ENST00000610000 484 ntBASIC18.61■□□□□ 0.57
CACNA1FO60840 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC18.61■□□□□ 0.57
CACNA1FO60840 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CACNA1FO60840 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CACNA1FO60840 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms