Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 INE2-201ENST00000630399 1874 ntBASIC15.76■□□□□ 0.11
CCDC188H7C350 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC188H7C350 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC15.76■□□□□ 0.11
CCDC188H7C350 AC090505.1-201ENST00000430515 1834 ntBASIC15.76■□□□□ 0.11
CCDC188H7C350 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC188H7C350 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC15.76■□□□□ 0.11
CCDC188H7C350 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC15.76■□□□□ 0.11
CCDC188H7C350 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.76■□□□□ 0.11
CCDC188H7C350 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC188H7C350 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
CCDC188H7C350 SPDYE7P-202ENST00000420373 878 ntBASIC15.76■□□□□ 0.11
CCDC188H7C350 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.76■□□□□ 0.11
CCDC188H7C350 FDX1P1-201ENST00000449115 551 ntBASIC15.76■□□□□ 0.11
CCDC188H7C350 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.76■□□□□ 0.11
CCDC188H7C350 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.76■□□□□ 0.11
CCDC188H7C350 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.76■□□□□ 0.11
CCDC188H7C350 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.76■□□□□ 0.11
CCDC188H7C350 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.76■□□□□ 0.11
CCDC188H7C350 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC188H7C350 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC15.76■□□□□ 0.11
CCDC188H7C350 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC188H7C350 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
CCDC188H7C350 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.76■□□□□ 0.11
CCDC188H7C350 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.76■□□□□ 0.11
CCDC188H7C350 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
CCDC188H7C350 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.76■□□□□ 0.11
CCDC188H7C350 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC15.76■□□□□ 0.11
CCDC188H7C350 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CCDC188H7C350 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
CCDC188H7C350 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC188H7C350 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC188H7C350 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC188H7C350 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CCDC188H7C350 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC188H7C350 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CCDC188H7C350 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CCDC188H7C350 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC188H7C350 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC188H7C350 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC188H7C350 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC188H7C350 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC188H7C350 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC188H7C350 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC188H7C350 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC188H7C350 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
CCDC188H7C350 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC188H7C350 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.75■□□□□ 0.11
CCDC188H7C350 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.75■□□□□ 0.11
CCDC188H7C350 PGAM5P1-201ENST00000518923 814 ntBASIC15.75■□□□□ 0.11
CCDC188H7C350 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC188H7C350 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC188H7C350 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.75■□□□□ 0.11
CCDC188H7C350 AC009093.7-201ENST00000623853 1223 ntBASIC15.75■□□□□ 0.11
CCDC188H7C350 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.75■□□□□ 0.11
CCDC188H7C350 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
CCDC188H7C350 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC188H7C350 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.75■□□□□ 0.11
CCDC188H7C350 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC188H7C350 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CCDC188H7C350 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC188H7C350 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
CCDC188H7C350 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CCDC188H7C350 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC188H7C350 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC188H7C350 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC15.75■□□□□ 0.11
CCDC188H7C350 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
CCDC188H7C350 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC188H7C350 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CCDC188H7C350 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC15.75■□□□□ 0.11
CCDC188H7C350 KRT8P24-201ENST00000560290 1559 ntBASIC15.75■□□□□ 0.11
CCDC188H7C350 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CCDC188H7C350 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CCDC188H7C350 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CCDC188H7C350 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CCDC188H7C350 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CCDC188H7C350 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms