Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 AZGP1P1-201ENST00000411909 902 ntBASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 AC142381.1-201ENST00000426099 345 ntBASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 RNA5SP415-201ENST00000517246 115 ntBASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 MAL2-202ENST00000531508 892 ntTSL 3 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 AC007787.1-201ENST00000588095 1583 ntBASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
KCNIP3Q9Y2W7 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 CIC-204ENST00000572681 8218 ntTSL 5 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 FAM86C2P-203ENST00000528684 1004 ntBASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 AP002472.1-201ENST00000577490 586 ntBASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 AC116407.3-201ENST00000623905 1129 ntBASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 AL645728.2-202ENST00000641679 227 ntBASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 AP001267.2-201ENST00000532619 2086 ntBASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 MBLAC2-202ENST00000514906 1936 ntBASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 AC055811.4-201ENST00000624039 1754 ntBASIC12.74□□□□□ -0.37
KCNIP3Q9Y2W7 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 AL356585.2-201ENST00000625078 2396 ntBASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
KCNIP3Q9Y2W7 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms