Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AC015656.1-201ENST00000624209 3578 ntBASIC11.41□□□□□ -0.58
LINC00477Q96M19 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00477Q96M19 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 AL360270.3-201ENST00000609118 1348 ntBASIC11.4□□□□□ -0.58
LINC00477Q96M19 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00477Q96M19 AC018529.2-202ENST00000611482 3087 ntBASIC11.4□□□□□ -0.58
LINC00477Q96M19 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00477Q96M19 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00477Q96M19 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00477Q96M19 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00477Q96M19 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00477Q96M19 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00477Q96M19 BAD-202ENST00000394531 631 ntTSL 3 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 KLF2P3-201ENST00000451977 1087 ntBASIC11.4□□□□□ -0.58
LINC00477Q96M19 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 AC125807.1-201ENST00000483097 614 ntBASIC11.4□□□□□ -0.58
LINC00477Q96M19 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00477Q96M19 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 BAD-207ENST00000544785 525 ntTSL 3 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 AC092865.5-201ENST00000545435 363 ntBASIC11.4□□□□□ -0.58
LINC00477Q96M19 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 CBFB-203ENST00000561924 584 ntTSL 5 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 AC004449.1-201ENST00000564240 433 ntBASIC11.4□□□□□ -0.58
LINC00477Q96M19 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 SSH2-210ENST00000582084 560 ntTSL 3 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00477Q96M19 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 USP3-204ENST00000540797 5474 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00477Q96M19 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00477Q96M19 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00477Q96M19 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
LINC00477Q96M19 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC11.4□□□□□ -0.58
LINC00477Q96M19 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.59
LINC00477Q96M19 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC11.4□□□□□ -0.59
LINC00477Q96M19 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC11.4□□□□□ -0.59
LINC00477Q96M19 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
LINC00477Q96M19 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.59
LINC00477Q96M19 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
LINC00477Q96M19 AL031595.1-201ENST00000623969 4709 ntBASIC11.4□□□□□ -0.59
LINC00477Q96M19 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
LINC00477Q96M19 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 MTHFR-210ENST00000641407 2387 ntBASIC11.39□□□□□ -0.59
LINC00477Q96M19 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 SNX18-202ENST00000343017 3140 ntBASIC11.39□□□□□ -0.59
LINC00477Q96M19 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 AL645937.2-201ENST00000396808 931 ntBASIC11.39□□□□□ -0.59
LINC00477Q96M19 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 TSEN15P1-201ENST00000423257 515 ntBASIC11.39□□□□□ -0.59
LINC00477Q96M19 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 AC109322.1-201ENST00000524499 1264 ntBASIC11.39□□□□□ -0.59
LINC00477Q96M19 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
LINC00477Q96M19 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 AC015911.4-201ENST00000588022 1070 ntBASIC11.39□□□□□ -0.59
LINC00477Q96M19 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC11.39□□□□□ -0.59
LINC00477Q96M19 Z92544.3-201ENST00000624747 417 ntBASIC11.39□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms