Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 CLUHP6-201ENST00000580789 941 ntBASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 COX11-210ENST00000639671 696 ntBASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.75□□□□□ -0.05
CLIP3Q96DZ5 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 CTBP2P5-201ENST00000454986 1264 ntBASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 AC093433.1-201ENST00000458048 571 ntBASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 SNX29P1-201ENST00000548357 1007 ntBASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
CLIP3Q96DZ5 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 MDM1-203ENST00000393543 2718 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 OR2I1P-209ENST00000641730 5365 ntBASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 USE1-206ENST00000595101 1776 ntTSL 2 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 PDIA3P1-201ENST00000471856 1510 ntBASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 AC023908.3-201ENST00000564211 3047 ntBASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 AP005117.1-202ENST00000581724 1908 ntBASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 AP001889.1-201ENST00000525414 633 ntBASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 AC005252.2-201ENST00000624630 1141 ntBASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CLIP3Q96DZ5 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CLIP3Q96DZ5 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms