Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 LRRC59-203ENST00000576448 1531 ntBASIC14.11□□□□□ -0.15
BEST3Q8N1M1 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 MIR1908-201ENST00000410394 80 ntBASIC14.11□□□□□ -0.15
BEST3Q8N1M1 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 ACTBP11-201ENST00000436287 1126 ntBASIC14.11□□□□□ -0.15
BEST3Q8N1M1 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 AC008687.7-202ENST00000637404 953 ntBASIC14.11□□□□□ -0.15
BEST3Q8N1M1 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
BEST3Q8N1M1 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 TPO-206ENST00000382269 1155 ntTSL 5 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 USB1-203ENST00000539737 1212 ntTSL 2 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 AC023310.1-201ENST00000554836 735 ntBASIC14.1□□□□□ -0.15
BEST3Q8N1M1 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 SAMD11P1-201ENST00000571429 661 ntBASIC14.1□□□□□ -0.15
BEST3Q8N1M1 MIR4538-201ENST00000581377 78 ntBASIC14.1□□□□□ -0.15
BEST3Q8N1M1 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 AC132938.4-201ENST00000623835 848 ntBASIC14.1□□□□□ -0.15
BEST3Q8N1M1 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 PRSS30P-206ENST00000641773 873 ntBASIC14.1□□□□□ -0.15
BEST3Q8N1M1 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.1□□□□□ -0.15
BEST3Q8N1M1 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms