Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDH1Q08174 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PCDH1Q08174 AC005089.1-201ENST00000619486 2241 ntBASIC14.64□□□□□ -0.07
PCDH1Q08174 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
PCDH1Q08174 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 AC023908.3-201ENST00000564211 3047 ntBASIC14.63□□□□□ -0.07
PCDH1Q08174 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.63□□□□□ -0.07
PCDH1Q08174 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.63□□□□□ -0.07
PCDH1Q08174 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PCDH1Q08174 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
PCDH1Q08174 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.63□□□□□ -0.07
PCDH1Q08174 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
PCDH1Q08174 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 PIN1P1-201ENST00000412108 996 ntBASIC14.63□□□□□ -0.07
PCDH1Q08174 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.63□□□□□ -0.07
PCDH1Q08174 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.63□□□□□ -0.07
PCDH1Q08174 MYCLP2-201ENST00000449268 967 ntBASIC14.63□□□□□ -0.07
PCDH1Q08174 ELK1P1-201ENST00000485699 580 ntBASIC14.63□□□□□ -0.07
PCDH1Q08174 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.63□□□□□ -0.07
PCDH1Q08174 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.63□□□□□ -0.07
PCDH1Q08174 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC14.63□□□□□ -0.07
PCDH1Q08174 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.63□□□□□ -0.07
PCDH1Q08174 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.63□□□□□ -0.07
PCDH1Q08174 AC133539.2-201ENST00000604757 467 ntBASIC14.63□□□□□ -0.07
PCDH1Q08174 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.63□□□□□ -0.07
PCDH1Q08174 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 AC023090.2-201ENST00000625182 2110 ntBASIC14.63□□□□□ -0.07
PCDH1Q08174 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.63□□□□□ -0.07
PCDH1Q08174 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PCDH1Q08174 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.63□□□□□ -0.07
PCDH1Q08174 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PCDH1Q08174 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
PCDH1Q08174 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
PCDH1Q08174 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
PCDH1Q08174 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.62□□□□□ -0.07
PCDH1Q08174 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.62□□□□□ -0.07
PCDH1Q08174 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
PCDH1Q08174 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
PCDH1Q08174 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.62□□□□□ -0.07
PCDH1Q08174 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.62□□□□□ -0.07
PCDH1Q08174 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.62□□□□□ -0.07
PCDH1Q08174 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 AC002472.2-201ENST00000442739 958 ntBASIC14.62□□□□□ -0.07
PCDH1Q08174 GIMAP3P-201ENST00000495150 836 ntBASIC14.62□□□□□ -0.07
PCDH1Q08174 AC022616.1-201ENST00000518688 554 ntBASIC14.62□□□□□ -0.07
PCDH1Q08174 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.62□□□□□ -0.07
PCDH1Q08174 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
PCDH1Q08174 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.62□□□□□ -0.07
PCDH1Q08174 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.62□□□□□ -0.07
PCDH1Q08174 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
PCDH1Q08174 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 AC004233.3-201ENST00000607794 1269 ntBASIC14.62□□□□□ -0.07
PCDH1Q08174 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.62□□□□□ -0.07
PCDH1Q08174 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PCDH1Q08174 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.62□□□□□ -0.07
PCDH1Q08174 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.62□□□□□ -0.07
PCDH1Q08174 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
PCDH1Q08174 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.62□□□□□ -0.07
PCDH1Q08174 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
PCDH1Q08174 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
PCDH1Q08174 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
PCDH1Q08174 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
PCDH1Q08174 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
PCDH1Q08174 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.61□□□□□ -0.07
PCDH1Q08174 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
PCDH1Q08174 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
PCDH1Q08174 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms