Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 GCK-209ENST00000616242 2260 ntTSL 5 BASIC10.51□□□□□ -0.73
PRKDCP78527 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
PRKDCP78527 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 AC007881.1-201ENST00000437460 187 ntBASIC10.51□□□□□ -0.73
PRKDCP78527 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 RN7SL128P-201ENST00000467883 305 ntBASIC10.51□□□□□ -0.73
PRKDCP78527 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC10.51□□□□□ -0.73
PRKDCP78527 AC120498.7-201ENST00000562876 330 ntBASIC10.51□□□□□ -0.73
PRKDCP78527 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC10.51□□□□□ -0.73
PRKDCP78527 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC10.51□□□□□ -0.73
PRKDCP78527 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC10.51□□□□□ -0.73
PRKDCP78527 Z82244.2-201ENST00000632196 448 ntBASIC10.51□□□□□ -0.73
PRKDCP78527 AC021072.1-201ENST00000635789 835 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
PRKDCP78527 BRD7P5-201ENST00000299197 1822 ntBASIC10.51□□□□□ -0.73
PRKDCP78527 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
PRKDCP78527 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC10.51□□□□□ -0.73
PRKDCP78527 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC10.51□□□□□ -0.73
PRKDCP78527 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC10.51□□□□□ -0.73
PRKDCP78527 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
PRKDCP78527 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC10.51□□□□□ -0.73
PRKDCP78527 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC10.51□□□□□ -0.73
PRKDCP78527 AC147876.1-201ENST00000504408 322 ntBASIC10.51□□□□□ -0.73
PRKDCP78527 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
PRKDCP78527 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC10.51□□□□□ -0.73
PRKDCP78527 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC10.51□□□□□ -0.73
PRKDCP78527 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC10.51□□□□□ -0.73
PRKDCP78527 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
PRKDCP78527 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC10.51□□□□□ -0.73
PRKDCP78527 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
PRKDCP78527 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 ZBED1P1-201ENST00000502364 1930 ntBASIC10.51□□□□□ -0.73
PRKDCP78527 FAM86FP-201ENST00000338711 969 ntBASIC10.51□□□□□ -0.73
PRKDCP78527 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC10.51□□□□□ -0.73
PRKDCP78527 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC10.51□□□□□ -0.73
PRKDCP78527 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC10.51□□□□□ -0.73
PRKDCP78527 RRNAD1-204ENST00000476229 1096 ntTSL 5 BASIC10.51□□□□□ -0.73
PRKDCP78527 ACY3-202ENST00000529256 933 ntTSL 3 BASIC10.51□□□□□ -0.73
PRKDCP78527 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC10.51□□□□□ -0.73
PRKDCP78527 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC10.51□□□□□ -0.73
PRKDCP78527 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC10.51□□□□□ -0.73
PRKDCP78527 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
PRKDCP78527 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC10.51□□□□□ -0.73
PRKDCP78527 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
PRKDCP78527 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC10.5□□□□□ -0.73
PRKDCP78527 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.73
PRKDCP78527 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC10.5□□□□□ -0.73
PRKDCP78527 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC10.5□□□□□ -0.73
PRKDCP78527 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC10.5□□□□□ -0.73
PRKDCP78527 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC10.5□□□□□ -0.73
PRKDCP78527 STK24P1-201ENST00000455035 1291 ntBASIC10.5□□□□□ -0.73
PRKDCP78527 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 KRT8P1-201ENST00000557533 1207 ntBASIC10.5□□□□□ -0.73
PRKDCP78527 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC10.5□□□□□ -0.73
PRKDCP78527 AC112220.4-201ENST00000604982 1263 ntBASIC10.5□□□□□ -0.73
PRKDCP78527 AC022001.3-201ENST00000606330 596 ntBASIC10.5□□□□□ -0.73
PRKDCP78527 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC10.5□□□□□ -0.73
PRKDCP78527 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC10.5□□□□□ -0.73
PRKDCP78527 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC10.5□□□□□ -0.73
PRKDCP78527 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC10.5□□□□□ -0.73
PRKDCP78527 AGGF1P2-201ENST00000426656 2106 ntBASIC10.5□□□□□ -0.73
PRKDCP78527 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC10.5□□□□□ -0.73
PRKDCP78527 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
PRKDCP78527 AL080243.1-201ENST00000423293 1060 ntBASIC10.5□□□□□ -0.73
PRKDCP78527 DPY19L2P4-201ENST00000479881 442 ntBASIC10.5□□□□□ -0.73
PRKDCP78527 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC10.5□□□□□ -0.73
PRKDCP78527 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC10.5□□□□□ -0.73
PRKDCP78527 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC10.5□□□□□ -0.73
PRKDCP78527 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC10.5□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms