Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGCS2P54868 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGCS2P54868 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
HMGCS2P54868 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGCS2P54868 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGCS2P54868 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.3■□□□□ 0.36
HMGCS2P54868 FGFR3P1-201ENST00000449999 601 ntBASIC17.3■□□□□ 0.36
HMGCS2P54868 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGCS2P54868 AC008267.1-201ENST00000474858 1069 ntBASIC17.3■□□□□ 0.36
HMGCS2P54868 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC17.3■□□□□ 0.36
HMGCS2P54868 LY6E-208ENST00000520531 490 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGCS2P54868 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
HMGCS2P54868 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
HMGCS2P54868 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
HMGCS2P54868 MIR4754-201ENST00000582477 89 ntBASIC17.3■□□□□ 0.36
HMGCS2P54868 AC009884.2-201ENST00000603110 324 ntBASIC17.3■□□□□ 0.36
HMGCS2P54868 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGCS2P54868 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGCS2P54868 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HMGCS2P54868 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGCS2P54868 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.3■□□□□ 0.36
HMGCS2P54868 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.3■□□□□ 0.36
HMGCS2P54868 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
HMGCS2P54868 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS2P54868 AC023090.2-201ENST00000625182 2110 ntBASIC17.29■□□□□ 0.36
HMGCS2P54868 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.29■□□□□ 0.36
HMGCS2P54868 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS2P54868 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS2P54868 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS2P54868 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS2P54868 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS2P54868 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGCS2P54868 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS2P54868 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGCS2P54868 SKA2-202ENST00000437036 625 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGCS2P54868 FADS2-212ENST00000522639 360 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGCS2P54868 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC17.29■□□□□ 0.36
HMGCS2P54868 FADS2-215ENST00000574708 385 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGCS2P54868 NAT9-211ENST00000580632 799 ntTSL 3 BASIC17.29■□□□□ 0.36
HMGCS2P54868 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGCS2P54868 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC17.29■□□□□ 0.36
HMGCS2P54868 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGCS2P54868 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS2P54868 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGCS2P54868 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS2P54868 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
HMGCS2P54868 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS2P54868 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC17.29■□□□□ 0.36
HMGCS2P54868 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS2P54868 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS2P54868 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS2P54868 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HMGCS2P54868 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGCS2P54868 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS2P54868 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
HMGCS2P54868 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS2P54868 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS2P54868 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGCS2P54868 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS2P54868 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGCS2P54868 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS2P54868 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS2P54868 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
HMGCS2P54868 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGCS2P54868 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
HMGCS2P54868 RPL17P11-201ENST00000417593 544 ntBASIC17.28■□□□□ 0.36
HMGCS2P54868 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC17.28■□□□□ 0.36
HMGCS2P54868 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS2P54868 AC019193.1-201ENST00000506678 823 ntBASIC17.28■□□□□ 0.36
HMGCS2P54868 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC17.28■□□□□ 0.36
HMGCS2P54868 IQSEC3P1-201ENST00000538799 536 ntBASIC17.28■□□□□ 0.36
HMGCS2P54868 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC17.28■□□□□ 0.36
HMGCS2P54868 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.28■□□□□ 0.36
HMGCS2P54868 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS2P54868 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS2P54868 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HMGCS2P54868 AC087481.3-201ENST00000602886 1894 ntBASIC17.28■□□□□ 0.36
HMGCS2P54868 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms