Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HNF4AP41235 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.76□□□□□ -0.05
HNF4AP41235 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.76□□□□□ -0.05
HNF4AP41235 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.76□□□□□ -0.05
HNF4AP41235 AL360270.3-201ENST00000609118 1348 ntBASIC14.76□□□□□ -0.05
HNF4AP41235 AC093525.8-201ENST00000624099 1342 ntBASIC14.76□□□□□ -0.05
HNF4AP41235 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
HNF4AP41235 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.76□□□□□ -0.05
HNF4AP41235 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.76□□□□□ -0.05
HNF4AP41235 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HNF4AP41235 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
HNF4AP41235 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
HNF4AP41235 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.76□□□□□ -0.05
HNF4AP41235 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.76□□□□□ -0.05
HNF4AP41235 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.76□□□□□ -0.05
HNF4AP41235 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.76□□□□□ -0.05
HNF4AP41235 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.76□□□□□ -0.05
HNF4AP41235 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.76□□□□□ -0.05
HNF4AP41235 AC093813.1-201ENST00000605066 256 ntBASIC14.76□□□□□ -0.05
HNF4AP41235 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.76□□□□□ -0.05
HNF4AP41235 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 AL138799.1-201ENST00000448213 1675 ntBASIC14.76□□□□□ -0.05
HNF4AP41235 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.76□□□□□ -0.05
HNF4AP41235 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
HNF4AP41235 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.76□□□□□ -0.05
HNF4AP41235 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
HNF4AP41235 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HNF4AP41235 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
HNF4AP41235 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
HNF4AP41235 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 LILRP1-201ENST00000444199 1370 ntBASIC14.75□□□□□ -0.05
HNF4AP41235 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.75□□□□□ -0.05
HNF4AP41235 AL391825.1-201ENST00000457671 1364 ntBASIC14.75□□□□□ -0.05
HNF4AP41235 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.75□□□□□ -0.05
HNF4AP41235 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.75□□□□□ -0.05
HNF4AP41235 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.75□□□□□ -0.05
HNF4AP41235 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.75□□□□□ -0.05
HNF4AP41235 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.75□□□□□ -0.05
HNF4AP41235 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.75□□□□□ -0.05
HNF4AP41235 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.75□□□□□ -0.05
HNF4AP41235 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.75□□□□□ -0.05
HNF4AP41235 BRI3BPP1-201ENST00000594224 787 ntBASIC14.75□□□□□ -0.05
HNF4AP41235 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.75□□□□□ -0.05
HNF4AP41235 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.75□□□□□ -0.05
HNF4AP41235 AL662799.1-202ENST00000614205 422 ntBASIC14.75□□□□□ -0.05
HNF4AP41235 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.75□□□□□ -0.05
HNF4AP41235 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.75□□□□□ -0.05
HNF4AP41235 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.75□□□□□ -0.05
HNF4AP41235 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.75□□□□□ -0.05
HNF4AP41235 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
HNF4AP41235 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 AC026748.1-201ENST00000624349 3251 ntBASIC14.75□□□□□ -0.05
HNF4AP41235 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
HNF4AP41235 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.75□□□□□ -0.05
HNF4AP41235 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.74□□□□□ -0.05
HNF4AP41235 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
HNF4AP41235 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.74□□□□□ -0.05
HNF4AP41235 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.74□□□□□ -0.05
HNF4AP41235 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.74□□□□□ -0.05
HNF4AP41235 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.74□□□□□ -0.05
HNF4AP41235 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HNF4AP41235 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms