Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HOXD3P31249 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC11.75□□□□□ -0.53
HOXD3P31249 KLF2P2-201ENST00000416807 1039 ntBASIC11.75□□□□□ -0.53
HOXD3P31249 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC11.75□□□□□ -0.53
HOXD3P31249 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC11.75□□□□□ -0.53
HOXD3P31249 AC114812.1-204ENST00000449669 728 ntBASIC11.75□□□□□ -0.53
HOXD3P31249 TPI1-206ENST00000488464 791 ntTSL 5 BASIC11.75□□□□□ -0.53
HOXD3P31249 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC11.75□□□□□ -0.53
HOXD3P31249 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC11.75□□□□□ -0.53
HOXD3P31249 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC11.75□□□□□ -0.53
HOXD3P31249 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC11.75□□□□□ -0.53
HOXD3P31249 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC11.75□□□□□ -0.53
HOXD3P31249 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC11.75□□□□□ -0.53
HOXD3P31249 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC11.75□□□□□ -0.53
HOXD3P31249 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC11.75□□□□□ -0.53
HOXD3P31249 LARP4-220ENST00000615080 856 ntTSL 5 BASIC11.75□□□□□ -0.53
HOXD3P31249 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC11.75□□□□□ -0.53
HOXD3P31249 ABBA01031663.1-201ENST00000635630 790 ntBASIC11.75□□□□□ -0.53
HOXD3P31249 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC11.75□□□□□ -0.53
HOXD3P31249 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HOXD3P31249 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC11.75□□□□□ -0.53
HOXD3P31249 KRT8P35-201ENST00000483942 1338 ntBASIC11.75□□□□□ -0.53
HOXD3P31249 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
HOXD3P31249 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HOXD3P31249 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXD3P31249 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC11.75□□□□□ -0.53
HOXD3P31249 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HOXD3P31249 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HOXD3P31249 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXD3P31249 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXD3P31249 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXD3P31249 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXD3P31249 LRRC59-203ENST00000576448 1531 ntBASIC11.75□□□□□ -0.53
HOXD3P31249 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC11.75□□□□□ -0.53
HOXD3P31249 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXD3P31249 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
HOXD3P31249 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC11.75□□□□□ -0.53
HOXD3P31249 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXD3P31249 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HOXD3P31249 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC11.74□□□□□ -0.53
HOXD3P31249 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
HOXD3P31249 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC11.74□□□□□ -0.53
HOXD3P31249 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
HOXD3P31249 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC11.74□□□□□ -0.53
HOXD3P31249 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
HOXD3P31249 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC11.74□□□□□ -0.53
HOXD3P31249 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 MIR1247-201ENST00000408206 136 ntBASIC11.74□□□□□ -0.53
HOXD3P31249 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 GOLGA2P4-201ENST00000441462 777 ntBASIC11.74□□□□□ -0.53
HOXD3P31249 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC11.74□□□□□ -0.53
HOXD3P31249 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC11.74□□□□□ -0.53
HOXD3P31249 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC11.74□□□□□ -0.53
HOXD3P31249 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC11.74□□□□□ -0.53
HOXD3P31249 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC11.74□□□□□ -0.53
HOXD3P31249 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 MBP-202ENST00000355994 2772 ntTSL 5 BASIC11.74□□□□□ -0.53
HOXD3P31249 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
HOXD3P31249 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 PGR-210ENST00000619228 3038 ntTSL 5 BASIC11.74□□□□□ -0.53
HOXD3P31249 AC126365.1-201ENST00000578585 1514 ntBASIC11.74□□□□□ -0.53
HOXD3P31249 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC11.74□□□□□ -0.53
HOXD3P31249 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 AC023024.2-201ENST00000623561 1993 ntBASIC11.74□□□□□ -0.53
HOXD3P31249 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC11.74□□□□□ -0.53
HOXD3P31249 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC11.74□□□□□ -0.53
HOXD3P31249 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
HOXD3P31249 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HOXD3P31249 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms