Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.94■□□□□ 0.14
BDNFP23560 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.94■□□□□ 0.14
BDNFP23560 MESTP3-201ENST00000503460 968 ntBASIC15.94■□□□□ 0.14
BDNFP23560 FTLP10-202ENST00000505798 471 ntBASIC15.94■□□□□ 0.14
BDNFP23560 AP003171.2-201ENST00000528208 925 ntBASIC15.94■□□□□ 0.14
BDNFP23560 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 RIT1-205ENST00000539040 919 ntTSL 2 BASIC15.94■□□□□ 0.14
BDNFP23560 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.94■□□□□ 0.14
BDNFP23560 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.94■□□□□ 0.14
BDNFP23560 AC106820.3-201ENST00000561653 397 ntBASIC15.94■□□□□ 0.14
BDNFP23560 C2orf69P2-201ENST00000562032 1123 ntBASIC15.94■□□□□ 0.14
BDNFP23560 AP006547.1-201ENST00000563435 692 ntBASIC15.94■□□□□ 0.14
BDNFP23560 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC15.94■□□□□ 0.14
BDNFP23560 MIR4538-201ENST00000581377 78 ntBASIC15.94■□□□□ 0.14
BDNFP23560 RN7SL219P-201ENST00000582872 296 ntBASIC15.94■□□□□ 0.14
BDNFP23560 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.94■□□□□ 0.14
BDNFP23560 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15.94■□□□□ 0.14
BDNFP23560 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.94■□□□□ 0.14
BDNFP23560 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
BDNFP23560 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.94■□□□□ 0.14
BDNFP23560 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.94■□□□□ 0.14
BDNFP23560 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.94■□□□□ 0.14
BDNFP23560 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 AC092384.3-202ENST00000564646 2873 ntBASIC15.94■□□□□ 0.14
BDNFP23560 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 TCAF2P1-201ENST00000291129 2421 ntBASIC15.94■□□□□ 0.14
BDNFP23560 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
BDNFP23560 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.94■□□□□ 0.14
BDNFP23560 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.94■□□□□ 0.14
BDNFP23560 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
BDNFP23560 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.94■□□□□ 0.14
BDNFP23560 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.93■□□□□ 0.14
BDNFP23560 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
BDNFP23560 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.93■□□□□ 0.14
BDNFP23560 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.93■□□□□ 0.14
BDNFP23560 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.93■□□□□ 0.14
BDNFP23560 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 HOMER2P2-201ENST00000451621 847 ntBASIC15.93■□□□□ 0.14
BDNFP23560 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC15.93■□□□□ 0.14
BDNFP23560 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC15.93■□□□□ 0.14
BDNFP23560 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC15.93■□□□□ 0.14
BDNFP23560 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.93■□□□□ 0.14
BDNFP23560 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.93■□□□□ 0.14
BDNFP23560 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
BDNFP23560 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
BDNFP23560 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.93■□□□□ 0.14
BDNFP23560 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 FKBP4P6-201ENST00000457486 1332 ntBASIC15.93■□□□□ 0.14
BDNFP23560 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
BDNFP23560 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
BDNFP23560 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.92■□□□□ 0.14
BDNFP23560 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.92■□□□□ 0.14
BDNFP23560 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
BDNFP23560 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.92■□□□□ 0.14
BDNFP23560 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 AC006486.2-201ENST00000624246 2199 ntBASIC15.92■□□□□ 0.14
BDNFP23560 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.92■□□□□ 0.14
BDNFP23560 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
BDNFP23560 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
BDNFP23560 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC15.92■□□□□ 0.14
BDNFP23560 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms