Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
TPM1P09493 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
TPM1P09493 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.78■□□□□ 0.28
TPM1P09493 KRT18P32-201ENST00000424695 1287 ntBASIC16.78■□□□□ 0.28
TPM1P09493 MKNK2P1-201ENST00000437526 628 ntBASIC16.78■□□□□ 0.28
TPM1P09493 MTND6P24-201ENST00000440466 518 ntBASIC16.78■□□□□ 0.28
TPM1P09493 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.78■□□□□ 0.28
TPM1P09493 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.78■□□□□ 0.28
TPM1P09493 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.78■□□□□ 0.28
TPM1P09493 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.78■□□□□ 0.28
TPM1P09493 BANF1P1-201ENST00000553684 263 ntBASIC16.78■□□□□ 0.28
TPM1P09493 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.78■□□□□ 0.28
TPM1P09493 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.78■□□□□ 0.28
TPM1P09493 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.78■□□□□ 0.28
TPM1P09493 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
TPM1P09493 BX640515.1-201ENST00000617215 977 ntBASIC16.78■□□□□ 0.28
TPM1P09493 MIR6069-201ENST00000620069 79 ntBASIC16.78■□□□□ 0.28
TPM1P09493 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC16.78■□□□□ 0.28
TPM1P09493 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.78■□□□□ 0.28
TPM1P09493 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.78■□□□□ 0.28
TPM1P09493 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
TPM1P09493 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC16.78■□□□□ 0.28
TPM1P09493 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
TPM1P09493 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC16.78■□□□□ 0.28
TPM1P09493 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
TPM1P09493 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TPM1P09493 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TPM1P09493 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.77■□□□□ 0.28
TPM1P09493 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TPM1P09493 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TPM1P09493 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TPM1P09493 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TPM1P09493 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
TPM1P09493 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TPM1P09493 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
TPM1P09493 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TPM1P09493 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TPM1P09493 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.77■□□□□ 0.28
TPM1P09493 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
TPM1P09493 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.77■□□□□ 0.28
TPM1P09493 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.77■□□□□ 0.28
TPM1P09493 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TPM1P09493 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.77■□□□□ 0.28
TPM1P09493 RN7SL828P-201ENST00000607615 303 ntBASIC16.77■□□□□ 0.28
TPM1P09493 AC120114.3-201ENST00000611923 658 ntBASIC16.77■□□□□ 0.28
TPM1P09493 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
TPM1P09493 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC16.77■□□□□ 0.27
TPM1P09493 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TPM1P09493 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TPM1P09493 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TPM1P09493 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TPM1P09493 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TPM1P09493 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
TPM1P09493 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC16.77■□□□□ 0.27
TPM1P09493 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TPM1P09493 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
TPM1P09493 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TPM1P09493 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TPM1P09493 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC16.77■□□□□ 0.27
TPM1P09493 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TPM1P09493 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TPM1P09493 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
TPM1P09493 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TPM1P09493 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TPM1P09493 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.76■□□□□ 0.27
TPM1P09493 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.76■□□□□ 0.27
TPM1P09493 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
TPM1P09493 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.76■□□□□ 0.27
TPM1P09493 SLC25A1P1-201ENST00000528351 927 ntBASIC16.76■□□□□ 0.27
TPM1P09493 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC16.76■□□□□ 0.27
TPM1P09493 AC025181.2-201ENST00000606994 802 ntBASIC16.76■□□□□ 0.27
TPM1P09493 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.76■□□□□ 0.27
TPM1P09493 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TPM1P09493 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms