Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.64□□□□□ -0.07
HOXC4P09017 AC007292.2-201ENST00000593524 1812 ntBASIC14.64□□□□□ -0.07
HOXC4P09017 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
HOXC4P09017 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
HOXC4P09017 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HOXC4P09017 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
HOXC4P09017 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
HOXC4P09017 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.63□□□□□ -0.07
HOXC4P09017 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.63□□□□□ -0.07
HOXC4P09017 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC14.63□□□□□ -0.07
HOXC4P09017 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 NKAIN1P1-201ENST00000435754 582 ntBASIC14.63□□□□□ -0.07
HOXC4P09017 AC005740.2-201ENST00000511085 419 ntBASIC14.63□□□□□ -0.07
HOXC4P09017 AC044849.1-201ENST00000519737 1188 ntBASIC14.63□□□□□ -0.07
HOXC4P09017 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC14.63□□□□□ -0.07
HOXC4P09017 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 AL451050.2-201ENST00000606967 682 ntBASIC14.63□□□□□ -0.07
HOXC4P09017 AC138649.2-201ENST00000615886 705 ntBASIC14.63□□□□□ -0.07
HOXC4P09017 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
HOXC4P09017 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC14.63□□□□□ -0.07
HOXC4P09017 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.63□□□□□ -0.07
HOXC4P09017 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
HOXC4P09017 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.63□□□□□ -0.07
HOXC4P09017 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.63□□□□□ -0.07
HOXC4P09017 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.63□□□□□ -0.07
HOXC4P09017 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC14.63□□□□□ -0.07
HOXC4P09017 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC14.63□□□□□ -0.07
HOXC4P09017 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HOXC4P09017 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HOXC4P09017 AL136379.1-201ENST00000623471 2642 ntBASIC14.62□□□□□ -0.07
HOXC4P09017 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.62□□□□□ -0.07
HOXC4P09017 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXC4P09017 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HOXC4P09017 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.62□□□□□ -0.07
HOXC4P09017 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.62□□□□□ -0.07
HOXC4P09017 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.62□□□□□ -0.07
HOXC4P09017 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.62□□□□□ -0.07
HOXC4P09017 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.62□□□□□ -0.07
HOXC4P09017 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
HOXC4P09017 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.62□□□□□ -0.07
HOXC4P09017 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.62□□□□□ -0.07
HOXC4P09017 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
HOXC4P09017 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXC4P09017 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXC4P09017 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC14.62□□□□□ -0.07
HOXC4P09017 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC14.62□□□□□ -0.07
HOXC4P09017 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HOXC4P09017 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXC4P09017 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
HOXC4P09017 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC14.62□□□□□ -0.07
HOXC4P09017 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HOXC4P09017 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HOXC4P09017 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HOXC4P09017 AC016700.1-201ENST00000429424 312 ntBASIC14.62□□□□□ -0.07
HOXC4P09017 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXC4P09017 CICP12-201ENST00000455801 843 ntBASIC14.62□□□□□ -0.07
HOXC4P09017 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HOXC4P09017 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC14.62□□□□□ -0.07
HOXC4P09017 AC106794.1-201ENST00000506935 792 ntBASIC14.62□□□□□ -0.07
HOXC4P09017 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC14.62□□□□□ -0.07
HOXC4P09017 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC14.62□□□□□ -0.07
HOXC4P09017 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC14.62□□□□□ -0.07
HOXC4P09017 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HOXC4P09017 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC14.62□□□□□ -0.07
HOXC4P09017 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
HOXC4P09017 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HOXC4P09017 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HOXC4P09017 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms