Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.92■□□□□ 0.14
APOEP02649 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.92■□□□□ 0.14
APOEP02649 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC15.92■□□□□ 0.14
APOEP02649 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.92■□□□□ 0.14
APOEP02649 AC022137.2-201ENST00000503482 481 ntBASIC15.92■□□□□ 0.14
APOEP02649 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.92■□□□□ 0.14
APOEP02649 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.92■□□□□ 0.14
APOEP02649 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.92■□□□□ 0.14
APOEP02649 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.92■□□□□ 0.14
APOEP02649 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
APOEP02649 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
APOEP02649 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.92■□□□□ 0.14
APOEP02649 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
APOEP02649 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.92■□□□□ 0.14
APOEP02649 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 AC134312.5-201ENST00000568031 1313 ntBASIC15.92■□□□□ 0.14
APOEP02649 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.92■□□□□ 0.14
APOEP02649 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
APOEP02649 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
APOEP02649 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
APOEP02649 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.91■□□□□ 0.14
APOEP02649 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
APOEP02649 AL158070.2-201ENST00000623713 1621 ntBASIC15.91■□□□□ 0.14
APOEP02649 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.91■□□□□ 0.14
APOEP02649 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.91■□□□□ 0.14
APOEP02649 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.91■□□□□ 0.14
APOEP02649 AC104457.1-201ENST00000401024 814 ntBASIC15.91■□□□□ 0.14
APOEP02649 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.91■□□□□ 0.14
APOEP02649 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.91■□□□□ 0.14
APOEP02649 AC012441.1-201ENST00000446669 685 ntBASIC15.91■□□□□ 0.14
APOEP02649 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.91■□□□□ 0.14
APOEP02649 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
APOEP02649 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
APOEP02649 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.91■□□□□ 0.14
APOEP02649 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.91■□□□□ 0.14
APOEP02649 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.91■□□□□ 0.14
APOEP02649 AC233724.13-201ENST00000598383 410 ntBASIC15.91■□□□□ 0.14
APOEP02649 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC15.91■□□□□ 0.14
APOEP02649 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.91■□□□□ 0.14
APOEP02649 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
APOEP02649 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
APOEP02649 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
APOEP02649 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
APOEP02649 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
APOEP02649 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
APOEP02649 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
APOEP02649 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
APOEP02649 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
APOEP02649 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.9■□□□□ 0.14
APOEP02649 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
APOEP02649 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.9■□□□□ 0.14
APOEP02649 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
APOEP02649 RNU1-114P-201ENST00000365297 166 ntBASIC15.9■□□□□ 0.14
APOEP02649 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
APOEP02649 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
APOEP02649 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms