Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC25.15■■□□□ 1.62
CUX2O14529 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
CUX2O14529 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC25.15■■□□□ 1.62
CUX2O14529 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CUX2O14529 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
CUX2O14529 MED15P3-201ENST00000413613 326 ntBASIC25.15■■□□□ 1.62
CUX2O14529 AC026412.1-206ENST00000502273 206 ntBASIC25.15■■□□□ 1.62
CUX2O14529 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC25.15■■□□□ 1.62
CUX2O14529 INO80E-209ENST00000567254 625 ntTSL 2 BASIC25.15■■□□□ 1.62
CUX2O14529 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC25.15■■□□□ 1.62
CUX2O14529 AL357143.1-203ENST00000639750 881 ntBASIC25.15■■□□□ 1.62
CUX2O14529 NKILA-202ENST00000614771 2598 ntBASIC25.15■■□□□ 1.62
CUX2O14529 AL662844.4-201ENST00000606367 2838 ntBASIC25.14■■□□□ 1.62
CUX2O14529 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CUX2O14529 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC25.14■■□□□ 1.62
CUX2O14529 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CUX2O14529 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CUX2O14529 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
CUX2O14529 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CUX2O14529 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC25.14■■□□□ 1.62
CUX2O14529 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
CUX2O14529 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC25.14■■□□□ 1.62
CUX2O14529 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CUX2O14529 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.61
CUX2O14529 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CUX2O14529 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC25.14■■□□□ 1.61
CUX2O14529 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC25.14■■□□□ 1.61
CUX2O14529 RHEB-207ENST00000496004 744 ntTSL 2 BASIC25.14■■□□□ 1.61
CUX2O14529 FOXN3-AS2-201ENST00000554071 1262 ntBASIC25.14■■□□□ 1.61
CUX2O14529 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CUX2O14529 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC25.14■■□□□ 1.61
CUX2O14529 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC25.14■■□□□ 1.61
CUX2O14529 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CUX2O14529 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CUX2O14529 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
CUX2O14529 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CUX2O14529 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CUX2O14529 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC25.13■■□□□ 1.61
CUX2O14529 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC25.13■■□□□ 1.61
CUX2O14529 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC25.13■■□□□ 1.61
CUX2O14529 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
CUX2O14529 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
CUX2O14529 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC25.13■■□□□ 1.61
CUX2O14529 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CUX2O14529 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CUX2O14529 ALG3P1-201ENST00000508806 1114 ntBASIC25.13■■□□□ 1.61
CUX2O14529 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC25.13■■□□□ 1.61
CUX2O14529 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
CUX2O14529 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC25.13■■□□□ 1.61
CUX2O14529 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC25.13■■□□□ 1.61
CUX2O14529 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC25.13■■□□□ 1.61
CUX2O14529 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CUX2O14529 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX2O14529 TNRC18P3-201ENST00000441896 2691 ntBASIC25.12■■□□□ 1.61
CUX2O14529 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX2O14529 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX2O14529 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX2O14529 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
CUX2O14529 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX2O14529 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX2O14529 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC25.12■■□□□ 1.61
CUX2O14529 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC25.12■■□□□ 1.61
CUX2O14529 DUX4L50-201ENST00000455245 715 ntBASIC25.12■■□□□ 1.61
CUX2O14529 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC25.12■■□□□ 1.61
CUX2O14529 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC25.12■■□□□ 1.61
CUX2O14529 SRP14-208ENST00000560773 468 ntTSL 3 BASIC25.12■■□□□ 1.61
CUX2O14529 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC25.12■■□□□ 1.61
CUX2O14529 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC25.12■■□□□ 1.61
CUX2O14529 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX2O14529 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC25.12■■□□□ 1.61
CUX2O14529 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC25.12■■□□□ 1.61
CUX2O14529 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
CUX2O14529 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC25.12■■□□□ 1.61
CUX2O14529 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CUX2O14529 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CUX2O14529 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CUX2O14529 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
CUX2O14529 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
CUX2O14529 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
CUX2O14529 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC25.11■■□□□ 1.61
CUX2O14529 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
CUX2O14529 FUCA1P1-201ENST00000374476 1351 ntBASIC25.11■■□□□ 1.61
CUX2O14529 MIR611-201ENST00000384869 67 ntBASIC25.11■■□□□ 1.61
CUX2O14529 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC25.11■■□□□ 1.61
CUX2O14529 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC25.11■■□□□ 1.61
CUX2O14529 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC25.11■■□□□ 1.61
CUX2O14529 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
CUX2O14529 AC018638.5-201ENST00000450885 754 ntBASIC25.11■■□□□ 1.61
CUX2O14529 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CUX2O14529 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC25.11■■□□□ 1.61
CUX2O14529 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC25.11■■□□□ 1.61
CUX2O14529 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC25.11■■□□□ 1.61
CUX2O14529 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC25.11■■□□□ 1.61
CUX2O14529 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms