Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 AC092862.1-201ENST00000541534 533 ntBASIC14.58□□□□□ -0.08
VPS13AQ96RL7 GOLGA2P7-209ENST00000560408 745 ntBASIC14.58□□□□□ -0.08
VPS13AQ96RL7 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 AC105250.1-201ENST00000509378 2057 ntBASIC14.58□□□□□ -0.08
VPS13AQ96RL7 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 RPS23-204ENST00000507980 836 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 AC007326.1-201ENST00000604539 458 ntBASIC14.58□□□□□ -0.08
VPS13AQ96RL7 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.57□□□□□ -0.08
VPS13AQ96RL7 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 AL590235.1-201ENST00000564650 861 ntBASIC14.57□□□□□ -0.08
VPS13AQ96RL7 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 NAV1-210ENST00000593583 726 ntBASIC14.57□□□□□ -0.08
VPS13AQ96RL7 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 RN7SKP109-201ENST00000410592 316 ntBASIC14.57□□□□□ -0.08
VPS13AQ96RL7 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 RPL35P9-201ENST00000446059 350 ntBASIC14.57□□□□□ -0.08
VPS13AQ96RL7 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 CD164-210ENST00000512821 964 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 FOXN3-AS2-201ENST00000554071 1262 ntBASIC14.57□□□□□ -0.08
VPS13AQ96RL7 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 GEMIN8P4-201ENST00000380526 729 ntBASIC14.57□□□□□ -0.08
VPS13AQ96RL7 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 RN7SL846P-201ENST00000467429 292 ntBASIC14.57□□□□□ -0.08
VPS13AQ96RL7 PPIA-208ENST00000489459 907 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 PPIA-210ENST00000620047 827 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS13AQ96RL7 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 AP000845.1-201ENST00000581677 2131 ntBASIC14.56□□□□□ -0.08
VPS13AQ96RL7 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 RPL14-203ENST00000416518 812 ntTSL 3 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 AC010976.2-201ENST00000609697 852 ntBASIC14.56□□□□□ -0.08
VPS13AQ96RL7 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
VPS13AQ96RL7 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms