Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC42Q96M95 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC42Q96M95 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC42Q96M95 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC42Q96M95 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC42Q96M95 AC015802.1-201ENST00000588104 1449 ntBASIC16.42■□□□□ 0.22
CCDC42Q96M95 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC42Q96M95 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC42Q96M95 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CCDC42Q96M95 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC16.42■□□□□ 0.22
CCDC42Q96M95 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC42Q96M95 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC42Q96M95 AL360270.3-201ENST00000609118 1348 ntBASIC16.42■□□□□ 0.22
CCDC42Q96M95 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC42Q96M95 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC42Q96M95 AL928921.2-201ENST00000641325 2442 ntBASIC16.41■□□□□ 0.22
CCDC42Q96M95 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 SDHAP3-202ENST00000515467 728 ntBASIC16.41■□□□□ 0.22
CCDC42Q96M95 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 AC051619.7-201ENST00000568314 623 ntBASIC16.41■□□□□ 0.22
CCDC42Q96M95 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 AL109936.8-201ENST00000641772 604 ntBASIC16.41■□□□□ 0.22
CCDC42Q96M95 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC16.41■□□□□ 0.22
CCDC42Q96M95 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC42Q96M95 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 BANP-203ENST00000393207 2438 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.4■□□□□ 0.22
CCDC42Q96M95 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 AC069262.1-201ENST00000539058 672 ntBASIC16.4■□□□□ 0.22
CCDC42Q96M95 AC010336.2-201ENST00000564226 506 ntBASIC16.4■□□□□ 0.22
CCDC42Q96M95 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 AC010327.4-202ENST00000591484 748 ntBASIC16.4■□□□□ 0.22
CCDC42Q96M95 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 AC000095.1-201ENST00000603208 874 ntBASIC16.4■□□□□ 0.22
CCDC42Q96M95 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 TEX28P1-201ENST00000613479 1221 ntBASIC16.4■□□□□ 0.22
CCDC42Q96M95 TEX28P2-201ENST00000617764 1221 ntBASIC16.4■□□□□ 0.22
CCDC42Q96M95 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.4■□□□□ 0.22
CCDC42Q96M95 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC42Q96M95 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms