Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC21.05■□□□□ 0.96
USP47Q96K76 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP47Q96K76 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
USP47Q96K76 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC21.05■□□□□ 0.96
USP47Q96K76 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC21.05■□□□□ 0.96
USP47Q96K76 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
USP47Q96K76 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
USP47Q96K76 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
USP47Q96K76 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP47Q96K76 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP47Q96K76 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC21.04■□□□□ 0.96
USP47Q96K76 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP47Q96K76 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP47Q96K76 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP47Q96K76 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP47Q96K76 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP47Q96K76 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC21.04■□□□□ 0.96
USP47Q96K76 CHMP1AP1-201ENST00000445563 662 ntBASIC21.04■□□□□ 0.96
USP47Q96K76 FAM86HP-204ENST00000513466 959 ntBASIC21.04■□□□□ 0.96
USP47Q96K76 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC21.04■□□□□ 0.96
USP47Q96K76 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
USP47Q96K76 AL583810.1-201ENST00000553344 1045 ntBASIC21.04■□□□□ 0.96
USP47Q96K76 MIR4741-201ENST00000579822 90 ntBASIC21.04■□□□□ 0.96
USP47Q96K76 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP47Q96K76 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC21.04■□□□□ 0.96
USP47Q96K76 AL358472.3-201ENST00000608147 415 ntBASIC21.04■□□□□ 0.96
USP47Q96K76 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP47Q96K76 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
USP47Q96K76 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP47Q96K76 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP47Q96K76 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC21.04■□□□□ 0.96
USP47Q96K76 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP47Q96K76 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
USP47Q96K76 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP47Q96K76 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP47Q96K76 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
USP47Q96K76 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
USP47Q96K76 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
USP47Q96K76 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC21.03■□□□□ 0.96
USP47Q96K76 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP47Q96K76 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC21.03■□□□□ 0.96
USP47Q96K76 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP47Q96K76 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP47Q96K76 KRT8P4-201ENST00000509735 1454 ntBASIC21.03■□□□□ 0.96
USP47Q96K76 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP47Q96K76 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP47Q96K76 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC21.03■□□□□ 0.96
USP47Q96K76 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP47Q96K76 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP47Q96K76 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
USP47Q96K76 FAM21FP-201ENST00000426241 1131 ntBASIC21.03■□□□□ 0.96
USP47Q96K76 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP47Q96K76 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
USP47Q96K76 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
USP47Q96K76 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC21.03■□□□□ 0.96
USP47Q96K76 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC21.03■□□□□ 0.96
USP47Q96K76 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP47Q96K76 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP47Q96K76 MTHFR-210ENST00000641407 2387 ntBASIC21.03■□□□□ 0.96
USP47Q96K76 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
USP47Q96K76 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP47Q96K76 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP47Q96K76 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC21.03■□□□□ 0.96
USP47Q96K76 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
USP47Q96K76 AL133338.1-201ENST00000565695 1517 ntBASIC21.03■□□□□ 0.96
USP47Q96K76 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC21.03■□□□□ 0.96
USP47Q96K76 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC21.02■□□□□ 0.96
USP47Q96K76 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC21.02■□□□□ 0.96
USP47Q96K76 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC21.02■□□□□ 0.96
USP47Q96K76 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC21.02■□□□□ 0.96
USP47Q96K76 RIT1-205ENST00000539040 919 ntTSL 2 BASIC21.02■□□□□ 0.96
USP47Q96K76 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC21.02■□□□□ 0.96
USP47Q96K76 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
USP47Q96K76 MIR4538-201ENST00000581377 78 ntBASIC21.02■□□□□ 0.96
USP47Q96K76 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC21.02■□□□□ 0.96
USP47Q96K76 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC21.02■□□□□ 0.96
USP47Q96K76 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP47Q96K76 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.95
USP47Q96K76 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC21.02■□□□□ 0.95
USP47Q96K76 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms