Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 PARVG-202ENST00000415224 999 ntTSL 2 BASIC18.66■□□□□ 0.58
SYNE4Q8N205 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE4Q8N205 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC18.66■□□□□ 0.58
SYNE4Q8N205 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC18.66■□□□□ 0.58
SYNE4Q8N205 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE4Q8N205 AC132192.2-201ENST00000596206 1147 ntBASIC18.66■□□□□ 0.58
SYNE4Q8N205 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC18.66■□□□□ 0.58
SYNE4Q8N205 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC18.66■□□□□ 0.58
SYNE4Q8N205 CDK7-214ENST00000626796 358 ntTSL 5 BASIC18.66■□□□□ 0.58
SYNE4Q8N205 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC18.66■□□□□ 0.58
SYNE4Q8N205 AL805961.1-203ENST00000641078 1258 ntBASIC18.66■□□□□ 0.58
SYNE4Q8N205 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE4Q8N205 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE4Q8N205 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SYNE4Q8N205 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SYNE4Q8N205 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE4Q8N205 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE4Q8N205 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE4Q8N205 AC006058.4-201ENST00000624016 1670 ntBASIC18.66■□□□□ 0.58
SYNE4Q8N205 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE4Q8N205 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE4Q8N205 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE4Q8N205 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE4Q8N205 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC18.65■□□□□ 0.58
SYNE4Q8N205 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC18.65■□□□□ 0.58
SYNE4Q8N205 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 AMT-239ENST00000636865 1914 ntTSL 5 BASIC18.65■□□□□ 0.58
SYNE4Q8N205 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SYNE4Q8N205 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SYNE4Q8N205 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 PUDPP3-201ENST00000445368 636 ntBASIC18.65■□□□□ 0.58
SYNE4Q8N205 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC18.65■□□□□ 0.58
SYNE4Q8N205 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC18.65■□□□□ 0.58
SYNE4Q8N205 HLA-J-204ENST00000495278 958 ntBASIC18.65■□□□□ 0.58
SYNE4Q8N205 AC125604.1-201ENST00000496255 707 ntBASIC18.65■□□□□ 0.58
SYNE4Q8N205 CDC23-208ENST00000505120 455 ntTSL 3 BASIC18.65■□□□□ 0.58
SYNE4Q8N205 AC106794.1-201ENST00000506935 792 ntBASIC18.65■□□□□ 0.58
SYNE4Q8N205 IQSEC3P1-201ENST00000538799 536 ntBASIC18.65■□□□□ 0.58
SYNE4Q8N205 AP003419.4-201ENST00000616071 517 ntBASIC18.65■□□□□ 0.58
SYNE4Q8N205 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 Z98259.2-201ENST00000641583 609 ntBASIC18.65■□□□□ 0.58
SYNE4Q8N205 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 LINC00554-201ENST00000564841 3011 ntBASIC18.65■□□□□ 0.58
SYNE4Q8N205 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE4Q8N205 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC18.64■□□□□ 0.58
SYNE4Q8N205 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
SYNE4Q8N205 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
SYNE4Q8N205 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SYNE4Q8N205 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
SYNE4Q8N205 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE4Q8N205 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE4Q8N205 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE4Q8N205 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE4Q8N205 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE4Q8N205 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE4Q8N205 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE4Q8N205 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE4Q8N205 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 AC234782.1-201ENST00000451950 919 ntBASIC18.64■□□□□ 0.57
SYNE4Q8N205 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE4Q8N205 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 SCARNA21-201ENST00000517026 139 ntBASIC18.64■□□□□ 0.57
SYNE4Q8N205 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 AC103988.2-201ENST00000561804 725 ntBASIC18.64■□□□□ 0.57
SYNE4Q8N205 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 RN7SL555P-201ENST00000584742 339 ntBASIC18.64■□□□□ 0.57
SYNE4Q8N205 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE4Q8N205 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE4Q8N205 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE4Q8N205 AC091951.1-201ENST00000512854 2465 ntBASIC18.64■□□□□ 0.57
SYNE4Q8N205 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SYNE4Q8N205 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SYNE4Q8N205 MROH4P-201ENST00000431302 1578 ntBASIC18.64■□□□□ 0.57
SYNE4Q8N205 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SYNE4Q8N205 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms