Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 MIR4453-201ENST00000584019 89 ntBASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 AL691432.1-201ENST00000596308 1422 ntBASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
PPP4R4Q6NUP7 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 MIR346-201ENST00000362234 95 ntBASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 GPS2P2-201ENST00000430745 888 ntBASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 CYMP-203ENST00000474680 1263 ntBASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 AC067863.1-201ENST00000494933 530 ntBASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 AC098859.1-201ENST00000502915 1238 ntBASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 AC073389.1-201ENST00000595595 795 ntBASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 AP001059.3-201ENST00000619053 235 ntBASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 REXO1L1P-201ENST00000379010 6598 ntBASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
PPP4R4Q6NUP7 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
PPP4R4Q6NUP7 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms