Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 TPO-206ENST00000382269 1155 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 CNN2P8-201ENST00000421872 913 ntBASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 DUX4L45-201ENST00000566406 1057 ntBASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 DERL2-202ENST00000570848 657 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 RN7SL560P-201ENST00000577943 264 ntBASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 AC015910.1-201ENST00000579400 975 ntBASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 AC084346.2-201ENST00000607097 949 ntBASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 AC008687.7-202ENST00000637404 953 ntBASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC144BQ3MJ40 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 AL133267.1-201ENST00000398220 340 ntBASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 RIT1-205ENST00000539040 919 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 AC103810.3-201ENST00000583567 96 ntBASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 AC117489.1-201ENST00000625169 3217 ntBASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 AC126365.1-201ENST00000578585 1514 ntBASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 GRK6P1-201ENST00000400595 1711 ntBASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC144BQ3MJ40 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 EMC4-209ENST00000559421 497 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 AC025279.2-201ENST00000569730 653 ntBASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC144BQ3MJ40 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms