Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCPP55072 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.28■□□□□ 0.2
VCPP55072 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCPP55072 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.28■□□□□ 0.2
VCPP55072 AC148477.4-201ENST00000613430 1793 ntBASIC16.28■□□□□ 0.2
VCPP55072 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.28■□□□□ 0.2
VCPP55072 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.28■□□□□ 0.2
VCPP55072 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VCPP55072 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VCPP55072 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VCPP55072 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.28■□□□□ 0.2
VCPP55072 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.28■□□□□ 0.2
VCPP55072 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VCPP55072 AC104457.1-201ENST00000401024 814 ntBASIC16.28■□□□□ 0.2
VCPP55072 AC106760.1-201ENST00000508690 800 ntBASIC16.28■□□□□ 0.2
VCPP55072 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.28■□□□□ 0.2
VCPP55072 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC16.28■□□□□ 0.2
VCPP55072 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
VCPP55072 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.28■□□□□ 0.2
VCPP55072 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.28■□□□□ 0.2
VCPP55072 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCPP55072 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCPP55072 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCPP55072 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCPP55072 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCPP55072 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCPP55072 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.28■□□□□ 0.2
VCPP55072 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCPP55072 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCPP55072 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.28■□□□□ 0.2
VCPP55072 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.28■□□□□ 0.2
VCPP55072 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VCPP55072 AGAP7P-201ENST00000582299 2062 ntBASIC16.28■□□□□ 0.2
VCPP55072 AGAP14-201ENST00000624701 2060 ntBASIC16.28■□□□□ 0.2
VCPP55072 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.28■□□□□ 0.2
VCPP55072 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.28■□□□□ 0.2
VCPP55072 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VCPP55072 MSTO2P-201ENST00000314835 1709 ntBASIC16.28■□□□□ 0.2
VCPP55072 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.28■□□□□ 0.2
VCPP55072 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
VCPP55072 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
VCPP55072 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.28■□□□□ 0.2
VCPP55072 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
VCPP55072 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.27■□□□□ 0.2
VCPP55072 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
VCPP55072 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.27■□□□□ 0.2
VCPP55072 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.27■□□□□ 0.2
VCPP55072 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
VCPP55072 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 FNTAP2-201ENST00000430308 634 ntBASIC16.27■□□□□ 0.2
VCPP55072 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.27■□□□□ 0.2
VCPP55072 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.27■□□□□ 0.2
VCPP55072 AC007969.1-201ENST00000433675 447 ntBASIC16.27■□□□□ 0.2
VCPP55072 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.27■□□□□ 0.2
VCPP55072 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC16.27■□□□□ 0.2
VCPP55072 SCARNA20.5-201ENST00000516991 142 ntBASIC16.27■□□□□ 0.2
VCPP55072 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC16.27■□□□□ 0.2
VCPP55072 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.27■□□□□ 0.2
VCPP55072 BRI3BPP1-201ENST00000594224 787 ntBASIC16.27■□□□□ 0.2
VCPP55072 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.27■□□□□ 0.2
VCPP55072 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.27■□□□□ 0.2
VCPP55072 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VCPP55072 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
VCPP55072 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VCPP55072 CICP24-201ENST00000605464 2705 ntBASIC16.27■□□□□ 0.19
VCPP55072 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VCPP55072 AC023024.2-201ENST00000623561 1993 ntBASIC16.27■□□□□ 0.19
VCPP55072 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.27■□□□□ 0.19
VCPP55072 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
VCPP55072 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
VCPP55072 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VCPP55072 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VCPP55072 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VCPP55072 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.27■□□□□ 0.19
VCPP55072 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
VCPP55072 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VCPP55072 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
VCPP55072 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.27■□□□□ 0.19
VCPP55072 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VCPP55072 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VCPP55072 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VCPP55072 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms