Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.69■□□□□ 0.1
NEK3P51956 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
NEK3P51956 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
NEK3P51956 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
NEK3P51956 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
NEK3P51956 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.68■□□□□ 0.1
NEK3P51956 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.68■□□□□ 0.1
NEK3P51956 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.68■□□□□ 0.1
NEK3P51956 MXI1-205ENST00000393134 889 ntTSL 2 BASIC15.68■□□□□ 0.1
NEK3P51956 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 TMEM14DP-201ENST00000422205 345 ntBASIC15.68■□□□□ 0.1
NEK3P51956 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.68■□□□□ 0.1
NEK3P51956 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC15.68■□□□□ 0.1
NEK3P51956 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.68■□□□□ 0.1
NEK3P51956 ENPP7P5-201ENST00000541031 1031 ntBASIC15.68■□□□□ 0.1
NEK3P51956 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.68■□□□□ 0.1
NEK3P51956 AC106886.1-201ENST00000568660 600 ntBASIC15.68■□□□□ 0.1
NEK3P51956 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.68■□□□□ 0.1
NEK3P51956 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.68■□□□□ 0.1
NEK3P51956 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.68■□□□□ 0.1
NEK3P51956 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
NEK3P51956 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
NEK3P51956 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
NEK3P51956 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC15.68■□□□□ 0.1
NEK3P51956 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
NEK3P51956 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 AC015656.1-201ENST00000624209 3578 ntBASIC15.67■□□□□ 0.1
NEK3P51956 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.67■□□□□ 0.1
NEK3P51956 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.67■□□□□ 0.1
NEK3P51956 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.67■□□□□ 0.1
NEK3P51956 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
NEK3P51956 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
NEK3P51956 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.67■□□□□ 0.1
NEK3P51956 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
NEK3P51956 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.67■□□□□ 0.1
NEK3P51956 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.67■□□□□ 0.1
NEK3P51956 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC15.67■□□□□ 0.1
NEK3P51956 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.67■□□□□ 0.1
NEK3P51956 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
NEK3P51956 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.67■□□□□ 0.1
NEK3P51956 AC126755.1-201ENST00000525846 6405 ntBASIC15.67■□□□□ 0.1
NEK3P51956 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.67■□□□□ 0.1
NEK3P51956 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.67■□□□□ 0.1
NEK3P51956 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
NEK3P51956 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.67■□□□□ 0.1
NEK3P51956 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
NEK3P51956 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.67■□□□□ 0.1
NEK3P51956 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
NEK3P51956 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.66■□□□□ 0.1
NEK3P51956 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
NEK3P51956 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
NEK3P51956 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
NEK3P51956 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
NEK3P51956 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms