Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CDX1P47902 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC12.51□□□□□ -0.41
CDX1P47902 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC12.51□□□□□ -0.41
CDX1P47902 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 AC140479.7-201ENST00000636301 2332 ntBASIC12.51□□□□□ -0.41
CDX1P47902 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC12.51□□□□□ -0.41
CDX1P47902 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
CDX1P47902 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC12.51□□□□□ -0.41
CDX1P47902 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC12.51□□□□□ -0.41
CDX1P47902 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC12.51□□□□□ -0.41
CDX1P47902 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC12.51□□□□□ -0.41
CDX1P47902 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC12.51□□□□□ -0.41
CDX1P47902 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CDX1P47902 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC12.5□□□□□ -0.41
CDX1P47902 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
CDX1P47902 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC12.5□□□□□ -0.41
CDX1P47902 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC12.5□□□□□ -0.41
CDX1P47902 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
CDX1P47902 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC12.5□□□□□ -0.41
CDX1P47902 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC12.5□□□□□ -0.41
CDX1P47902 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC12.5□□□□□ -0.41
CDX1P47902 CENPM-206ENST00000407253 818 ntTSL 2 BASIC12.5□□□□□ -0.41
CDX1P47902 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC12.5□□□□□ -0.41
CDX1P47902 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC12.5□□□□□ -0.41
CDX1P47902 AC009477.1-201ENST00000452936 217 ntBASIC12.5□□□□□ -0.41
CDX1P47902 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC12.5□□□□□ -0.41
CDX1P47902 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC12.5□□□□□ -0.41
CDX1P47902 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC12.5□□□□□ -0.41
CDX1P47902 TERF1P3-201ENST00000505638 1227 ntBASIC12.5□□□□□ -0.41
CDX1P47902 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC12.5□□□□□ -0.41
CDX1P47902 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 SSH2-210ENST00000582084 560 ntTSL 3 BASIC12.5□□□□□ -0.41
CDX1P47902 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC12.5□□□□□ -0.41
CDX1P47902 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC12.5□□□□□ -0.41
CDX1P47902 AC009118.2-201ENST00000613275 655 ntBASIC12.5□□□□□ -0.41
CDX1P47902 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC12.5□□□□□ -0.41
CDX1P47902 MIR6069-201ENST00000620069 79 ntBASIC12.5□□□□□ -0.41
CDX1P47902 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CDX1P47902 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC12.5□□□□□ -0.41
CDX1P47902 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC12.5□□□□□ -0.41
CDX1P47902 BTBD7P1-201ENST00000447253 1453 ntBASIC12.5□□□□□ -0.41
CDX1P47902 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC12.5□□□□□ -0.41
CDX1P47902 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC12.5□□□□□ -0.41
CDX1P47902 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC12.5□□□□□ -0.41
CDX1P47902 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CDX1P47902 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC12.5□□□□□ -0.41
CDX1P47902 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC12.5□□□□□ -0.41
CDX1P47902 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CDX1P47902 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CDX1P47902 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC12.49□□□□□ -0.41
CDX1P47902 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC12.49□□□□□ -0.41
CDX1P47902 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC12.49□□□□□ -0.41
CDX1P47902 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC12.49□□□□□ -0.41
CDX1P47902 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC12.49□□□□□ -0.41
CDX1P47902 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
CDX1P47902 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms