Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A5P29400 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A5P29400 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.66■□□□□ 0.42
COL4A5P29400 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.66■□□□□ 0.42
COL4A5P29400 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.66■□□□□ 0.42
COL4A5P29400 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC17.66■□□□□ 0.42
COL4A5P29400 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC17.66■□□□□ 0.42
COL4A5P29400 MROH4P-201ENST00000431302 1578 ntBASIC17.66■□□□□ 0.42
COL4A5P29400 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC17.66■□□□□ 0.42
COL4A5P29400 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.66■□□□□ 0.42
COL4A5P29400 AC025183.3-201ENST00000623526 1482 ntBASIC17.66■□□□□ 0.42
COL4A5P29400 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC17.66■□□□□ 0.42
COL4A5P29400 AC092580.1-201ENST00000433998 658 ntBASIC17.66■□□□□ 0.42
COL4A5P29400 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC17.66■□□□□ 0.42
COL4A5P29400 AC093826.1-201ENST00000508655 993 ntBASIC17.66■□□□□ 0.42
COL4A5P29400 AC027139.1-201ENST00000565286 951 ntBASIC17.66■□□□□ 0.42
COL4A5P29400 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC17.66■□□□□ 0.42
COL4A5P29400 RNF146-211ENST00000609447 607 ntTSL 4 BASIC17.66■□□□□ 0.42
COL4A5P29400 AC011471.3-201ENST00000623576 402 ntBASIC17.66■□□□□ 0.42
COL4A5P29400 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A5P29400 C18orf15-201ENST00000623680 2534 ntBASIC17.66■□□□□ 0.42
COL4A5P29400 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A5P29400 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.66■□□□□ 0.42
COL4A5P29400 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A5P29400 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL4A5P29400 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.65■□□□□ 0.42
COL4A5P29400 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
COL4A5P29400 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC17.65■□□□□ 0.42
COL4A5P29400 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC17.65■□□□□ 0.42
COL4A5P29400 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC17.65■□□□□ 0.42
COL4A5P29400 GCSHP3-201ENST00000431120 391 ntBASIC17.65■□□□□ 0.42
COL4A5P29400 ERP29P1-201ENST00000442902 706 ntBASIC17.65■□□□□ 0.42
COL4A5P29400 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC17.65■□□□□ 0.42
COL4A5P29400 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC17.65■□□□□ 0.42
COL4A5P29400 MIR4472-1-201ENST00000584349 80 ntBASIC17.65■□□□□ 0.42
COL4A5P29400 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC17.65■□□□□ 0.42
COL4A5P29400 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
COL4A5P29400 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
COL4A5P29400 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.65■□□□□ 0.42
COL4A5P29400 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.65■□□□□ 0.42
COL4A5P29400 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
COL4A5P29400 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL4A5P29400 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC17.65■□□□□ 0.42
COL4A5P29400 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL4A5P29400 CELP-201ENST00000411440 1249 ntTSL 5 BASIC17.64■□□□□ 0.42
COL4A5P29400 ACTBP7-201ENST00000418351 1124 ntBASIC17.64■□□□□ 0.42
COL4A5P29400 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC17.64■□□□□ 0.42
COL4A5P29400 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC17.64■□□□□ 0.42
COL4A5P29400 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC17.64■□□□□ 0.42
COL4A5P29400 DDX39AP1-201ENST00000445147 1181 ntBASIC17.64■□□□□ 0.42
COL4A5P29400 RGS5-216ENST00000449680 788 ntTSL 3 BASIC17.64■□□□□ 0.42
COL4A5P29400 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC17.64■□□□□ 0.42
COL4A5P29400 KRT8P1-201ENST00000557533 1207 ntBASIC17.64■□□□□ 0.42
COL4A5P29400 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC17.64■□□□□ 0.42
COL4A5P29400 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC17.64■□□□□ 0.42
COL4A5P29400 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.64■□□□□ 0.42
COL4A5P29400 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL4A5P29400 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A5P29400 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
COL4A5P29400 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A5P29400 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A5P29400 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A5P29400 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A5P29400 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.64■□□□□ 0.41
COL4A5P29400 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A5P29400 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC17.64■□□□□ 0.41
COL4A5P29400 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A5P29400 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
COL4A5P29400 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A5P29400 AC095040.1-201ENST00000513286 675 ntBASIC17.64■□□□□ 0.41
COL4A5P29400 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC17.64■□□□□ 0.41
COL4A5P29400 AC012158.2-201ENST00000536546 354 ntBASIC17.64■□□□□ 0.41
COL4A5P29400 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC17.64■□□□□ 0.41
COL4A5P29400 RN7SL357P-201ENST00000581065 298 ntBASIC17.64■□□□□ 0.41
COL4A5P29400 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL4A5P29400 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A5P29400 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC17.64■□□□□ 0.41
COL4A5P29400 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
COL4A5P29400 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A5P29400 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL4A5P29400 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC17.63■□□□□ 0.41
COL4A5P29400 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.63■□□□□ 0.41
COL4A5P29400 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL4A5P29400 LTB4R2-202ENST00000528054 3092 ntBASIC17.63■□□□□ 0.41
COL4A5P29400 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms