Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
PCNAP12004 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
PCNAP12004 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
PCNAP12004 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
PCNAP12004 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
PCNAP12004 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
PCNAP12004 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.87□□□□□ -0.03
PCNAP12004 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.87□□□□□ -0.03
PCNAP12004 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.87□□□□□ -0.03
PCNAP12004 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.87□□□□□ -0.03
PCNAP12004 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.87□□□□□ -0.03
PCNAP12004 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
PCNAP12004 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
PCNAP12004 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
PCNAP12004 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.87□□□□□ -0.03
PCNAP12004 AC015656.1-201ENST00000624209 3578 ntBASIC14.86□□□□□ -0.03
PCNAP12004 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.86□□□□□ -0.03
PCNAP12004 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.86□□□□□ -0.03
PCNAP12004 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.86□□□□□ -0.03
PCNAP12004 MROH4P-201ENST00000431302 1578 ntBASIC14.86□□□□□ -0.03
PCNAP12004 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
PCNAP12004 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.86□□□□□ -0.03
PCNAP12004 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
PCNAP12004 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.86□□□□□ -0.03
PCNAP12004 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
PCNAP12004 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 MRPS18AP1-201ENST00000414458 589 ntBASIC14.86□□□□□ -0.03
PCNAP12004 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.86□□□□□ -0.03
PCNAP12004 GHSR-202ENST00000427970 912 ntBASIC14.86□□□□□ -0.03
PCNAP12004 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.86□□□□□ -0.03
PCNAP12004 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.86□□□□□ -0.03
PCNAP12004 INGX-202ENST00000489074 768 ntBASIC14.86□□□□□ -0.03
PCNAP12004 DOC2GP-202ENST00000514950 1163 ntBASIC14.86□□□□□ -0.03
PCNAP12004 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.86□□□□□ -0.03
PCNAP12004 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.86□□□□□ -0.03
PCNAP12004 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.86□□□□□ -0.03
PCNAP12004 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.86□□□□□ -0.03
PCNAP12004 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.86□□□□□ -0.03
PCNAP12004 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.86□□□□□ -0.03
PCNAP12004 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.86□□□□□ -0.03
PCNAP12004 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.86□□□□□ -0.03
PCNAP12004 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
PCNAP12004 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
PCNAP12004 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.86□□□□□ -0.03
PCNAP12004 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 AJ011931.1-201ENST00000618749 2492 ntBASIC14.86□□□□□ -0.03
PCNAP12004 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.86□□□□□ -0.03
PCNAP12004 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.86□□□□□ -0.03
PCNAP12004 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PCNAP12004 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
PCNAP12004 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCNAP12004 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCNAP12004 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.85□□□□□ -0.03
PCNAP12004 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCNAP12004 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCNAP12004 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCNAP12004 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCNAP12004 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
PCNAP12004 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.85□□□□□ -0.03
PCNAP12004 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCNAP12004 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PCNAP12004 CLK3P2-201ENST00000427566 1453 ntBASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms