Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGB1P09429 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
HMGB1P09429 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HMGB1P09429 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.89■□□□□ 0.45
HMGB1P09429 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC17.89■□□□□ 0.45
HMGB1P09429 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGB1P09429 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGB1P09429 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGB1P09429 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGB1P09429 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.88■□□□□ 0.45
HMGB1P09429 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
HMGB1P09429 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGB1P09429 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGB1P09429 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGB1P09429 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
HMGB1P09429 DGCR5-201ENST00000399539 862 ntBASIC17.88■□□□□ 0.45
HMGB1P09429 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGB1P09429 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGB1P09429 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.88■□□□□ 0.45
HMGB1P09429 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.88■□□□□ 0.45
HMGB1P09429 AC092364.2-202ENST00000597012 1073 ntBASIC17.88■□□□□ 0.45
HMGB1P09429 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 LINC00552-201ENST00000625151 2579 ntBASIC17.88■□□□□ 0.45
HMGB1P09429 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
HMGB1P09429 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 USE1-206ENST00000595101 1776 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGB1P09429 AC055811.4-201ENST00000624039 1754 ntBASIC17.88■□□□□ 0.45
HMGB1P09429 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HMGB1P09429 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
HMGB1P09429 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC17.88■□□□□ 0.45
HMGB1P09429 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
HMGB1P09429 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB1P09429 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGB1P09429 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGB1P09429 MTHFR-210ENST00000641407 2387 ntBASIC17.87■□□□□ 0.45
HMGB1P09429 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
HMGB1P09429 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
HMGB1P09429 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB1P09429 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 EIF3FP3-201ENST00000434851 1086 ntBASIC17.87■□□□□ 0.45
HMGB1P09429 HMGN1P19-201ENST00000436976 333 ntBASIC17.87■□□□□ 0.45
HMGB1P09429 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.87■□□□□ 0.45
HMGB1P09429 AC093433.1-201ENST00000458048 571 ntBASIC17.87■□□□□ 0.45
HMGB1P09429 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGB1P09429 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB1P09429 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB1P09429 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB1P09429 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB1P09429 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC17.87■□□□□ 0.45
HMGB1P09429 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGB1P09429 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
HMGB1P09429 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
HMGB1P09429 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC17.87■□□□□ 0.45
HMGB1P09429 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 MYO15B-237ENST00000642007 4893 ntBASIC17.87■□□□□ 0.45
HMGB1P09429 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HMGB1P09429 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.87■□□□□ 0.45
HMGB1P09429 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.86■□□□□ 0.45
HMGB1P09429 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
HMGB1P09429 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGB1P09429 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms