Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 AP000593.2-201ENST00000542775 1433 ntBASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 AL391280.1-201ENST00000506969 1062 ntBASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 AL138725.1-201ENST00000407347 1314 ntBASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
ECHDC3Q96DC8 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 RN7SKP230-201ENST00000365642 335 ntBASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 TLE1P1-201ENST00000422965 589 ntBASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 YBX1P6-201ENST00000442962 1002 ntBASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 CNN2P10-201ENST00000443067 918 ntBASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 AL583810.1-201ENST00000553344 1045 ntBASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 RN7SL713P-201ENST00000582127 302 ntBASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 OR10B1P-201ENST00000601666 907 ntBASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
ECHDC3Q96DC8 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ECHDC3Q96DC8 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
ECHDC3Q96DC8 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.1■□□□□ 0.01
ECHDC3Q96DC8 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ECHDC3Q96DC8 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC15.1■□□□□ 0.01
ECHDC3Q96DC8 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ECHDC3Q96DC8 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.1■□□□□ 0.01
ECHDC3Q96DC8 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
ECHDC3Q96DC8 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms