Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
SHROOM3Q8TF72 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 NUS1P3-201ENST00000423502 862 ntBASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 GOLGA2P4-201ENST00000441462 777 ntBASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 AP001267.2-201ENST00000532619 2086 ntBASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
SHROOM3Q8TF72 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 MIR1908-201ENST00000410394 80 ntBASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.42■□□□□ 0.06
SHROOM3Q8TF72 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 AC020907.1-201ENST00000616460 1350 ntBASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms