Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 RN7SL560P-201ENST00000577943 264 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 BRI3BPP1-201ENST00000594224 787 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC244093.1-201ENST00000610837 814 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC005252.2-201ENST00000624630 1141 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AL391294.1-201ENST00000641352 4068 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 FXR1-221ENST00000491674 365 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AP000812.2-201ENST00000538934 718 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 WDR47-202ENST00000361054 4115 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 APOA1-205ENST00000375329 927 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC097359.3-201ENST00000603982 1210 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 BNIP3P1-202ENST00000550043 1585 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC134407.2-201ENST00000625089 1978 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 MIR663B-201ENST00000408361 115 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 HNRNPUP1-201ENST00000554987 333 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC133539.2-201ENST00000604757 467 ntBASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 RBMS1-201ENST00000348849 4273 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 RECQL5-204ENST00000423245 3576 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 LMX1A-202ENST00000342310 3545 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 OS9-205ENST00000413095 1660 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms