Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 HNRNPFP1-201ENST00000391730 1133 ntBASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 PPP6R2P1-201ENST00000450880 1275 ntBASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 SLBP-205ENST00000488267 987 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 AC069120.2-201ENST00000524091 540 ntBASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 AL512361.1-201ENST00000554200 418 ntBASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 AL138828.2-201ENST00000615812 383 ntBASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 SPDYE12P-201ENST00000618416 771 ntBASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 AF228730.6-201ENST00000641497 218 ntBASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 AC084121.3-201ENST00000641716 218 ntBASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 AC079781.4-201ENST00000641908 219 ntBASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 REXO1L4P-201ENST00000605109 1937 ntBASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 TUBB3P1-201ENST00000405796 1332 ntBASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
CCDC54Q8NEL0 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 VPS29-207ENST00000549970 818 ntTSL 3 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 LINC01115-203ENST00000606068 577 ntBASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.31□□□□□ -0.28
CCDC54Q8NEL0 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms