Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RNU1-114P-201ENST00000365297 166 ntBASIC18.35■□□□□ 0.53
VPS53Q5VIR6 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 AL512384.1-201ENST00000406683 331 ntBASIC18.35■□□□□ 0.53
VPS53Q5VIR6 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 AC093433.1-201ENST00000458048 571 ntBASIC18.35■□□□□ 0.53
VPS53Q5VIR6 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 AC004066.1-201ENST00000502488 802 ntBASIC18.35■□□□□ 0.53
VPS53Q5VIR6 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 RBM7-207ENST00000544582 692 ntTSL 3 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 MIR5189-201ENST00000577370 114 ntBASIC18.35■□□□□ 0.53
VPS53Q5VIR6 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 HLA-K-203ENST00000430151 1046 ntBASIC18.34■□□□□ 0.53
VPS53Q5VIR6 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 ENPP7P5-201ENST00000541031 1031 ntBASIC18.34■□□□□ 0.53
VPS53Q5VIR6 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 ATF5-205ENST00000600336 682 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS53Q5VIR6 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
VPS53Q5VIR6 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS53Q5VIR6 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS53Q5VIR6 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC18.33■□□□□ 0.53
VPS53Q5VIR6 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS53Q5VIR6 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 EDF1-203ENST00000371649 790 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 METTL26-214ENST00000614890 801 ntTSL 3 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 BX539320.1-201ENST00000623759 877 ntBASIC18.33■□□□□ 0.52
VPS53Q5VIR6 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 AL358472.5-202ENST00000641448 1267 ntBASIC18.33■□□□□ 0.52
VPS53Q5VIR6 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms