Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RC3H1Q5TC82 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RC3H1Q5TC82 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RC3H1Q5TC82 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 FAS-202ENST00000352159 1722 ntTSL 5 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 AC105137.3-201ENST00000617588 984 ntBASIC18.74■□□□□ 0.59
RC3H1Q5TC82 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RC3H1Q5TC82 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 RNA5SP359-201ENST00000364838 113 ntBASIC18.73■□□□□ 0.59
RC3H1Q5TC82 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 ORAOV1P1-201ENST00000503108 395 ntBASIC18.73■□□□□ 0.59
RC3H1Q5TC82 MRPL22P1-201ENST00000505398 616 ntBASIC18.73■□□□□ 0.59
RC3H1Q5TC82 AC007326.1-201ENST00000604539 458 ntBASIC18.73■□□□□ 0.59
RC3H1Q5TC82 AC127024.7-201ENST00000625101 200 ntBASIC18.73■□□□□ 0.59
RC3H1Q5TC82 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC18.73■□□□□ 0.59
RC3H1Q5TC82 AL513523.2-202ENST00000427283 2040 ntBASIC18.73■□□□□ 0.59
RC3H1Q5TC82 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 Z69890.1-201ENST00000382990 339 ntBASIC18.72■□□□□ 0.59
RC3H1Q5TC82 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 HIST2H2BA-201ENST00000412169 381 ntBASIC18.72■□□□□ 0.59
RC3H1Q5TC82 AL157792.1-201ENST00000488281 530 ntBASIC18.72■□□□□ 0.59
RC3H1Q5TC82 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 AC027237.1-201ENST00000560942 655 ntBASIC18.72■□□□□ 0.59
RC3H1Q5TC82 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 AC005357.2-202ENST00000590507 1060 ntBASIC18.72■□□□□ 0.59
RC3H1Q5TC82 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 AC005618.3-201ENST00000624928 458 ntBASIC18.72■□□□□ 0.59
RC3H1Q5TC82 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RC3H1Q5TC82 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms